CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014094.1-P	Field mustard	plastid	93.72	92.82
CDY17799	Canola	nucleus, plastid	92.27	88.02
CDY20903	Canola	nucleus, plastid	83.33	82.34
CDY06723	Canola	nucleus, plastid	82.13	81.15
PGSC0003DMT400025521	Potato	plastid	43.24	57.01
CDY47503	Canola	nucleus	58.94	55.96
CDX73189	Canola	nucleus	57.97	55.94
CDY13543	Canola	nucleus	57.25	54.86
CDY39052	Canola	nucleus	58.7	54.48
GSMUA_Achr11P...	Banana	nucleus	34.06	54.23
Solyc04g081370.2.1	Tomato	extracellular, vacuole	55.8	51.22
TraesCS2A01G004600.1	Wheat	nucleus	34.3	42.01
GSMUA_Achr8P19240_001	Banana	nucleus	42.27	41.47
GSMUA_Achr11P...	Banana	nucleus	43.24	39.0
Os04t0115500-00	Rice	nucleus	42.27	36.46
Zm00001d004497_P001	Maize	nucleus, plastid	39.37	35.51
CDY42181	Canola	cytosol	21.5	34.5
CDX76365	Canola	cytosol	21.26	34.11
TraesCSU01G012300.1	Wheat	nucleus, plastid	39.86	34.02
TraesCS2D01G004200.1	Wheat	nucleus, plastid	39.61	33.4
Zm00001d024883_P001	Maize	nucleus	41.3	33.4
CDY29286	Canola	nucleus	32.61	32.85
EES10376	Sorghum	nucleus	42.27	32.29
CDX89265	Canola	nucleus	32.85	31.85
CDY12954	Canola	nucleus	20.29	31.82
CDY19564	Canola	nucleus	20.05	31.44
CDY63658	Canola	cytosol	20.77	30.94
CDY16714	Canola	cytosol	20.77	30.94
CDY06635	Canola	nucleus	32.85	30.91
CDY28761	Canola	nucleus	33.09	30.65
CDY02000	Canola	golgi	26.81	29.52
CDX97869	Canola	golgi	26.09	29.35
CDX97964	Canola	cytosol	25.12	28.97
CDY18344	Canola	nucleus	31.4	28.7
CDY51355	Canola	golgi	25.36	28.3
CDY49785	Canola	cytosol	24.4	28.21
CDY45464	Canola	golgi	26.81	23.92

Protein Annotations

EnsemblPlants:CDY16999	EnsemblPlantsGene:GSBRNA2T00094944001	Gene3D:3.90.228.10	GO:A0A078FVB2	PANTHER:PTHR31681	PANTHER:PTHR31681:SF22
ProteinID:CDY16999	ProteinID:CDY16999.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0004EEB308	UniProt:A0A078FVB2
MapMan:15.5.15	:	:	:	:	:

Description

BnaA08g03630DBnaA08g03630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVB2]

Coordinates

chrLK032069:+:48136..53082

Molecular Weight (calculated)

45497.3 Da

IEP (calculated)

10.405

GRAVY (calculated)

-0.543

Length

414 amino acids

Sequence
(BLAST)

001: MAPLPLIPNQ TQSQTRLFSS DPKKKKSRKK QTPLPQTQTQ TQTLKKKTVQ SSSSSWSQIK NLLSCKQIEG PRVHEPSKIT SSSCGSSLCK FSDVIYGNAR
101: VIHRSDHSPG SSNLGQDAGL LTRKPVTRGS SSTVRSNGCG AYTSYSSSKA MQFRKLSGCY ECHMIVDPSR KSSCCTPKKK KESAIIPALM HRIPSELRMS
201: ELGPEDSGRN IVNIIFKSSW LRKDSPIYNI ERILKVHNTQ RTIQRFEDCR DAVKSHAHAS TRKEPRSAAD GNELLRFHCT TVSCSLGSRG STSLCSNFPG
301: CRVCTIIRHG FHAKTLRLGG GANEIKGVRT TASSGRAHDA SRCFDQRRAM LVCRVIAGRV RRVQSDAQED ENGSGSYDSV AGPAGVYTNL DDLVVFNPKA
401: ILPCFVVIYK VSEP

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.