Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28761 | Canola | nucleus | 96.82 | 95.3 |
| AT5G54630.1 | Thale cress | nucleus | 87.95 | 81.99 |
| CDY18344 | Canola | nucleus | 83.41 | 81.02 |
| KRH25897 | Soybean | cytosol | 32.27 | 79.78 |
| CDY29286 | Canola | nucleus | 69.32 | 74.21 |
| CDX89265 | Canola | nucleus | 70.68 | 72.83 |
| KRH55605 | Soybean | cytosol | 70.0 | 69.84 |
| KRH27121 | Soybean | cytosol, plastid | 67.73 | 68.35 |
| KRH22216 | Soybean | cytosol, plastid | 68.18 | 68.34 |
| VIT_19s0014g05000.t01 | Wine grape | cytosol, plastid | 66.59 | 68.3 |
| PGSC0003DMT400049491 | Potato | cytosol, nucleus, peroxisome | 64.32 | 65.81 |
| Solyc07g063970.2.1 | Tomato | cytosol, nucleus, peroxisome | 63.41 | 65.34 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 62.27 | 56.96 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 62.27 | 56.49 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 61.59 | 55.76 |
| HORVU3Hr1G077490.2 | Barley | nucleus | 61.14 | 55.46 |
| Zm00001d012605_P001 | Maize | nucleus | 60.68 | 53.29 |
| Zm00001d043243_P001 | Maize | nucleus | 61.14 | 53.27 |
| TraesCS3A01G324600.1 | Wheat | nucleus | 61.36 | 53.25 |
| EES03733 | Sorghum | nucleus | 61.14 | 51.43 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 49.77 | 47.1 |
| Zm00001d014485_P001 | Maize | nucleus, plastid | 40.23 | 40.41 |
| CDX97964 | Canola | cytosol | 32.95 | 40.39 |
| EER88828 | Sorghum | cytosol | 39.32 | 40.05 |
| CDY49785 | Canola | cytosol | 32.05 | 39.39 |
| CDY42181 | Canola | cytosol | 21.14 | 36.05 |
| CDX76365 | Canola | cytosol | 21.14 | 36.05 |
| CDY47503 | Canola | nucleus | 35.45 | 35.78 |
| CDY19564 | Canola | nucleus | 21.36 | 35.61 |
| CDY12954 | Canola | nucleus | 21.36 | 35.61 |
| CDX73189 | Canola | nucleus | 34.55 | 35.43 |
| CDY20903 | Canola | nucleus, plastid | 33.64 | 35.32 |
| CDY06723 | Canola | nucleus, plastid | 33.64 | 35.32 |
| CDY63658 | Canola | cytosol | 22.27 | 35.25 |
| CDY16714 | Canola | cytosol | 22.05 | 34.89 |
| CDY13543 | Canola | nucleus | 34.09 | 34.72 |
| CDY39052 | Canola | nucleus | 34.77 | 34.3 |
| CDY16999 | Canola | nucleus, plastid | 30.91 | 32.85 |
| CDY17799 | Canola | nucleus, plastid | 30.91 | 31.34 |
| CDX97869 | Canola | golgi | 26.14 | 31.25 |
| CDY51355 | Canola | golgi | 25.23 | 29.92 |
| CDY02000 | Canola | golgi | 24.77 | 28.99 |
| CDY45464 | Canola | golgi | 24.77 | 23.49 |
Protein Annotations
| EnsemblPlants:CDY06635 | EnsemblPlantsGene:GSBRNA2T00122795001 | Gene3D:3.90.228.10 | GO:A0A078EX50 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF19 | ProteinID:CDY06635 |
| ProteinID:CDY06635.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI0004EDB9C2 | MapMan:15.5.15 |
Description
BnaC02g13590D
Coordinates
chrLK031971:+:1014647..1016360
Molecular Weight (calculated)
48232.3 Da
IEP (calculated)
10.209
GRAVY (calculated)
-0.411
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSNTRSQT KKTKKLQKDK NKKKNIPTVW FSLKKSLHCK SEPSDVHVPK STKHLTTIST KRISTVNSSL PSAGCGGGLS GCSRSIANLK DVIHGSKRHF
101: EKPPISSPRS IGSNEFLNPI THEVILSNST CELKITGVGD MASPAGATES GGSGVGNGRS TTFVGMLRPG TPMHHLNRFH TKRRVSLEMN RDSAVNGGKY
201: SVSCHKCGKQ FSKLEAAEAH HLSKHAVTEL VEGDSSRKIV EIICRTSWLK SENQCGRIDR VLKVHNMQKT LARFEEYRET VKIRASKLQK KHPRCLADGN
301: ELLRFHGTTV ACGLGINGST SLCTAEKCCV CRIIRNGFSA KREKNNGVGV FTASTSGRAF ESILVEEDDG ERTVRKVLIV CRVIAGRVHR PVENVEEMNG
401: LMMSGFDSLA GKVGLYTNVE ELYLLNPRAL LPCFVVICKS
101: EKPPISSPRS IGSNEFLNPI THEVILSNST CELKITGVGD MASPAGATES GGSGVGNGRS TTFVGMLRPG TPMHHLNRFH TKRRVSLEMN RDSAVNGGKY
201: SVSCHKCGKQ FSKLEAAEAH HLSKHAVTEL VEGDSSRKIV EIICRTSWLK SENQCGRIDR VLKVHNMQKT LARFEEYRET VKIRASKLQK KHPRCLADGN
301: ELLRFHGTTV ACGLGINGST SLCTAEKCCV CRIIRNGFSA KREKNNGVGV FTASTSGRAF ESILVEEDDG ERTVRKVLIV CRVIAGRVHR PVENVEEMNG
401: LMMSGFDSLA GKVGLYTNVE ELYLLNPRAL LPCFVVICKS
001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
Arabidopsis Description
AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.