CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22216	Soybean	cytosol, plastid	95.64	94.99
KRH25897	Soybean	cytosol	36.24	88.76
KRH55605	Soybean	cytosol	87.16	86.17
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	81.88	83.22
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	75.92	77.52
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	76.38	77.44
CDY29286	Canola	nucleus	63.99	67.88
CDY06635	Canola	nucleus	68.35	67.73
CDY28761	Canola	nucleus	68.58	66.89
Bra026366.1-P	Field mustard	nucleus	63.99	65.49
CDX89265	Canola	nucleus	63.99	65.34
AT5G54630.1	Thale cress	nucleus	70.41	65.04
AT4G27240.1	Thale cress	nucleus	64.22	64.97
Bra022735.1-P	Field mustard	nucleus	70.41	64.9
CDY18344	Canola	nucleus	64.91	62.47
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	66.97	60.21
TraesCS3D01G317900.1	Wheat	nucleus	65.14	59.04
TraesCS3B01G353600.1	Wheat	nucleus	64.68	58.02
HORVU3Hr1G077490.2	Barley	nucleus	64.45	57.94
Zm00001d043243_P001	Maize	nucleus	66.51	57.43
Zm00001d012605_P001	Maize	nucleus	65.14	56.69
EES03733	Sorghum	nucleus	66.51	55.45
TraesCS3A01G324600.1	Wheat	nucleus	64.45	55.42
Os06t0683000-01	Rice	cytosol, nucleus, plastid	52.52	49.25
EER88828	Sorghum	cytosol	44.5	44.91
Zm00001d014485_P001	Maize	nucleus, plastid	44.04	43.84
KRH10693	Soybean	nucleus	38.07	41.71
KRH21644	Soybean	nucleus	36.93	40.35
KRH73867	Soybean	cytosol	12.84	37.09
KRH17425	Soybean	nucleus	35.09	36.96
KRH05942	Soybean	nucleus	35.32	36.93
KRH58632	Soybean	nucleus	30.05	36.19
KRH28045	Soybean	mitochondrion	22.71	34.74
KRH04088	Soybean	cytosol	22.48	33.68
KRH77393	Soybean	mitochondrion	21.79	33.45
KRH64726	Soybean	nucleus	32.57	33.33
KRH53192	Soybean	nucleus	32.11	33.1
KRH57359	Soybean	cytosol	21.33	32.52
KRH37293	Soybean	plastid	10.78	30.52
KRH14275	Soybean	cytosol	18.58	30.34
KRG98330	Soybean	endoplasmic reticulum, golgi	26.15	29.84

Protein Annotations

EMBL:ACUP02007774	EnsemblPlants:KRH27121	EnsemblPlantsGene:GLYMA_12G215700	EntrezGene:100816798	Gene3D:3.90.228.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19
ProteinID:KRH27121	ProteinID:KRH27121.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI00023D17D0
UniProt:I1LUS5	MapMan:15.5.15	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:37490065..37492346

Molecular Weight (calculated)

47436.9 Da

IEP (calculated)

9.574

GRAVY (calculated)

-0.365

Length

436 amino acids

Sequence
(BLAST)

001: MPTVWFSLKR SLHCKSEPSD VHDPKTRKQL ATILTKKGGS SRSGCSRSIA NLKDVIHGSK RHLEKPPSCS PRSIGSSEFL NPITHEVILS NSRCELKITG
101: YGGFQEGGVG SDGGGGANNR SATSGDLSTF VGTLRPGTPG PGGHPTMHYF NPSFRTTSTP PRKSPFHSSD KEGSGLHGVG VLGLHSSTRV PLETDSNVSS
201: TVTCHKCGDQ FNKWEAAEAH HLSKHAVTEL VEGDSSRKIV EIICRTSWLK SEKQCGRIER VLKVHNMQKT LARFEEYREL VKIKASKLPK KHPRCLADGN
301: ELLRFYGTTV ACSLGLSGSS SLCLSEKCYV CRIIRNGFSA KEELKGGVGV FTTSTSGRAF ECIKVFDHDP SLRKALIVCR VIAGRVHRPL ENIQEMAGQT
401: GFDSLAGKVG LYSNIEELYL LNSRGLLPCF VVICKP

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.