Factsheet for Bra026366.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89265	Canola	nucleus	100.0	99.77
AT4G27240.1	Thale cress	nucleus	82.63	81.67
KRH25897	Soybean	cytosol	32.63	78.09
Bra022735.1-P	Field mustard	nucleus	75.82	68.29
KRH55605	Soybean	cytosol	68.78	66.44
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	65.49	65.03
KRH22216	Soybean	cytosol, plastid	66.43	64.46
KRH27121	Soybean	cytosol, plastid	65.49	63.99
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	63.62	63.47
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	63.62	63.02
TraesCS3D01G317900.1	Wheat	nucleus	60.09	53.22
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	60.56	53.2
HORVU3Hr1G077490.2	Barley	nucleus	60.56	53.2
TraesCS3B01G353600.1	Wheat	nucleus	59.62	52.26
Zm00001d043243_P001	Maize	nucleus	60.33	50.89
Zm00001d012605_P001	Maize	nucleus	59.39	50.5
TraesCS3A01G324600.1	Wheat	nucleus	59.62	50.1
EES03733	Sorghum	nucleus	59.86	48.76
Os06t0683000-01	Rice	cytosol, nucleus, plastid	49.06	44.95
Bra019849.1-P	Field mustard	cytosol, mitochondrion	35.68	42.46
Zm00001d014485_P001	Maize	nucleus, plastid	41.55	40.41
EER88828	Sorghum	cytosol	40.38	39.81
Bra020842.1-P	Field mustard	cytosol	22.07	36.43
Bra027038.1-P	Field mustard	cytosol, plastid	22.54	36.36
Bra015598.1-P	Field mustard	plastid	34.98	35.56
Bra014094.1-P	Field mustard	plastid	34.04	34.69
Bra029455.1-P	Field mustard	cytosol	22.54	34.53
Bra008218.1-P	Field mustard	nucleus	36.15	34.53
Bra015824.1-P	Field mustard	nucleus	37.32	34.34
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	26.06	29.84
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	25.12	28.38

Protein Annotations

EnsemblPlants:Bra026366.1	EnsemblPlants:Bra026366.1-P	EnsemblPlantsGene:Bra026366	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002545B02	UniProt:M4EC57	MapMan:15.5.15

Description

AT4G27240 (E=8e-182) | zinc finger (C2H2 type) family protein

Coordinates

chrA01:+:9727229..9728609

Molecular Weight (calculated)

46967.9 Da

IEP (calculated)

9.796

GRAVY (calculated)

-0.591

Length

426 amino acids

Sequence
(BLAST)

001: MEGSRKRSEK KKKHQLEREN TNTQKNKKLP SVWFSLKKSL HCKSDPTDVH DPSSRSKETT KRSTYRSGCS RSIANLKDVI HGSNRHLEKP TTCSSPRSIG
101: SSEFLNPITH EVIISNSTSE LKITAAAGDK DSPAGAREFV GTLRPGTPVH YSSSHINQAS RKASSERDRG GAAFKQSRRD SAVVNGDDSS VSCHKCGEKF
201: SNLEAAEAHH LTKHAVTELV EGDSSRKIVE MICRTSWLKT ENQCGRIDRI LKVHNMQKTL ARFEEYRDTV KNRASKLQKK HPRCIADGNE LLRFHGTTVS
301: CVLGVNGCTS LCSSEKCCVC RIIRNGFSVK REMNNGIGVF TASTSGRAFE SIAMDGGDGT TERKALIVCR VIAGRVHRPV ENVEEMGGLN GFDSLAGKVG
401: LYTNVEELYL LNSRALLPCF VVICKP

Best Arabidopsis Sequence Match ( AT4G27240.1 )
(BLAST)

001: MEASSTRSEK KKKKKTIQRE NTDTQKKKKL PSVWFSLKKS LPCKSDVSDV HIPRSKKELA PISTKRTTTS SGGGVGGRSG CSRSIANLKD VIHGNQRHLE
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P

Arabidopsis Description

At4g27240 [Source:UniProtKB/TrEMBL;Acc:O81827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.