Factsheet for PGSC0003DMT400049491

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	97.67	98.36
KRH25897	Soybean	cytosol	34.65	83.71
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	79.07	79.25
KRH55605	Soybean	cytosol	79.53	77.55
KRH22216	Soybean	cytosol, plastid	79.07	77.45
KRH27121	Soybean	cytosol, plastid	77.44	76.38
PGSC0003DMT400055929	Potato	cytosol	64.42	66.43
CDY29286	Canola	nucleus	63.02	65.94
CDY06635	Canola	nucleus	65.81	64.32
Bra026366.1-P	Field mustard	nucleus	63.02	63.62
CDX89265	Canola	nucleus	63.02	63.47
CDY28761	Canola	nucleus	65.81	63.31
AT4G27240.1	Thale cress	nucleus	62.79	62.65
AT5G54630.1	Thale cress	nucleus	66.28	60.38
Bra022735.1-P	Field mustard	nucleus	66.28	60.25
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	67.44	59.79
TraesCS3D01G317900.1	Wheat	nucleus	66.28	59.25
CDY18344	Canola	nucleus	61.63	58.5
HORVU3Hr1G077490.2	Barley	nucleus	65.58	58.14
TraesCS3B01G353600.1	Wheat	nucleus	65.58	58.02
Zm00001d043243_P001	Maize	nucleus	66.51	56.63
Zm00001d012605_P001	Maize	nucleus	65.35	56.09
TraesCS3A01G324600.1	Wheat	nucleus	65.35	55.42
EES03733	Sorghum	nucleus	67.21	55.26
Os06t0683000-01	Rice	cytosol, nucleus, plastid	51.86	47.96
EER88828	Sorghum	cytosol	43.95	43.75
PGSC0003DMT400025521	Potato	plastid	30.93	42.36
Zm00001d014485_P001	Maize	nucleus, plastid	43.02	42.24
PGSC0003DMT400074652	Potato	plastid	30.93	41.3
PGSC0003DMT400076665	Potato	cytosol	12.09	32.7
PGSC0003DMT400012224	Potato	nucleus	22.56	32.44
PGSC0003DMT400078031	Potato	extracellular, vacuole	27.91	32.26

Protein Annotations

EnsemblPlants:PGSC0003DMT400049491	EnsemblPlantsGene:PGSC0003DMG400019231	EntrezGene:102605244	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19	PGSC:PGSC0003DMG400019231
RefSeq:XP_006360102.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI000295ED70	UniProt:M1BNU5
MapMan:15.5.15	:	:	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019231]

Coordinates

chr7:-:54130351..54133467

Molecular Weight (calculated)

46697.0 Da

IEP (calculated)

9.193

GRAVY (calculated)

-0.393

Length

430 amino acids

Sequence
(BLAST)

001: MGEKKNMPAV WFSLKRSLHC KSGPSDVHDP KTRKELSTIL TKKGGGRSGC SRSIANLKDV IHGSKRHLDK PPSCSPRSIG SSEFLNPITH EVILSNSRCE
101: LKITSFNGFQ ESGNGGSGVG GGVSTNGGST FVGTLRPGTP GPGGHPTMHY FNSGCRNTPT RRSASFLVDK EGHTSSFASK TRYSLDNDVN GTSSGVTCHK
201: CGEQFGKWEA LEEHHLSKHA VSELLEGDSS RKIVEIICRS SWLKSESQVG RIERVLKVHN TQKTLARFEE YREMVKSKAS KLPKKHPRCI ADGNELLRFY
301: GTTLACGLGM NGSCCLCISD KCCVCRIIRN GFSTKKELKG GIGVFTTSTS GSAYECIEMS EDDPSLRKAL IVCRVVAGRV HRPLENIQEM AGQTGFDSLA
401: GKVGVYSNIE ELYLLNPKAL LPCFVVICKA

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.