Factsheet for TraesCS3D01G317900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G353600.1	Wheat	nucleus	96.67	95.68
HORVU3Hr1G077490.2	Barley	nucleus	94.18	93.4
TraesCS3A01G324600.1	Wheat	nucleus	94.18	89.35
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	84.41	83.71
Zm00001d043243_P001	Maize	nucleus	81.7	77.82
Zm00001d012605_P001	Maize	nucleus	79.63	76.45
EES03733	Sorghum	nucleus	81.29	74.76
KRH25897	Soybean	cytosol	27.65	74.72
GSMUA_Achr6P19070_001	Banana	cytosol	19.13	69.7
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	60.91	68.3
VIT_00s1356g00010.t01	Wine grape	cytosol	54.47	67.88
GSMUA_Achr6P24320_001	Banana	cytosol	47.19	67.36
KRH55605	Soybean	cytosol	60.91	66.44
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	59.25	66.28
GSMUA_Achr9P24720_001	Banana	cytosol	49.69	66.2
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	58.63	66.04
GSMUA_Achr1P08590_001	Banana	nucleus	57.17	65.95
KRH22216	Soybean	cytosol, plastid	59.67	65.38
GSMUA_Achr9P29950_001	Banana	cytosol	50.94	65.33
KRH27121	Soybean	cytosol, plastid	59.04	65.14
GSMUA_AchrUn_...	Banana	cytosol	48.44	64.72
PGSC0003DMT400055929	Potato	cytosol	55.51	64.03
Solyc02g079920.2.1	Tomato	cytosol	55.09	62.95
CDY06635	Canola	nucleus	56.96	62.27
CDY28761	Canola	nucleus	57.8	62.19
CDY29286	Canola	nucleus	53.01	62.04
Bra026366.1-P	Field mustard	nucleus	53.22	60.09
AT4G27240.1	Thale cress	nucleus	53.85	60.09
CDX89265	Canola	nucleus	53.22	59.95
Bra022735.1-P	Field mustard	nucleus	58.63	59.62
AT5G54630.1	Thale cress	nucleus	57.59	58.69
CDY18344	Canola	nucleus	54.05	57.4
GSMUA_Achr6P19060_001	Banana	nucleus	26.2	55.75
AT1G11490.2	Thale cress	mitochondrion	32.22	42.47
Bra019849.1-P	Field mustard	cytosol, mitochondrion	31.18	41.9
CDY49785	Canola	cytosol	30.77	41.34
CDX97964	Canola	cytosol	30.77	41.23
KRH10693	Soybean	nucleus	32.43	39.2
KRH21644	Soybean	nucleus	30.98	37.34
KRH58632	Soybean	nucleus	27.23	36.19
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	18.71	31.14
TraesCS2D01G004200.1	Wheat	nucleus, plastid	30.77	30.14
TraesCS6D01G230200.1	Wheat	plastid	17.26	29.64
TraesCS4D01G108700.1	Wheat	nucleus	26.4	29.06
TraesCS2D01G580400.1	Wheat	nucleus	28.9	27.74
TraesCS4D01G215000.1	Wheat	golgi	23.91	26.62
TraesCS4D01G361200.1	Wheat	plastid	15.59	24.35

Protein Annotations

EnsemblPlants:TraesCS3D01G317900.1	EnsemblPlantsGene:TraesCS3D01G317900	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF23	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF56399	MapMan:15.5.15	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:431839545..431841631

Molecular Weight (calculated)

50062.5 Da

IEP (calculated)

9.596

GRAVY (calculated)

-0.287

Length

481 amino acids

Sequence
(BLAST)

001: MGERRRRASA VAGGDGRGEE KAAAPAPAPA PTVWFALKKS LQCRSQSSEV HVPKPKASSS SSAGGHLSSI MTKRAARSGC SRSIANLRDV IHGSKRHPGQ
101: PPSCSPRSIG SSEFLNPIAH EVVLSTNSRC ELKITGFGGC GGLGAAGGGA PAHEAEGGGD GGVVSSFVGT LRPGTPGPGW SHGLQYSGSC RAGSMRCTPP
201: RSPNPLLDRD GAPAATAHRA SCEVDAAKTG GAKGSGGLSC HRCAEQFGKW EALEAHHLSK HAVTELVEGD SSRKIVEIIC RTSLLKSESS CVRIERVFKV
301: HNTQRTLARF EEYREAVKLK ASKLAKKHPR CLADGNELLR FHGATLACAL GSAGASSLCA SDKCAVCRII RHGFSSSSSK KDGKAGAGVG VFTTSTSGRA
401: FESADEEDDP AAAAGGARRA LLVCRVIAGR VHKPLENVRE FVGQTGFDSL AGKVGPYANI EELYLLNPRA LLPCFVVICK P

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.