Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G569700.1 | Wheat | nucleus | 50.9 | 97.33 |
| TraesCS2B01G627700.1 | Wheat | nucleus | 93.81 | 95.14 |
| HORVU2Hr1G125620.2 | Barley | nucleus | 17.76 | 88.12 |
| Zm00001d026684_P001 | Maize | nucleus | 51.7 | 61.81 |
| EES11701 | Sorghum | nucleus | 57.29 | 57.98 |
| Os04t0690100-01 | Rice | nucleus | 55.29 | 55.62 |
| TraesCS4D01G108700.1 | Wheat | nucleus | 35.93 | 41.19 |
| TraesCS2D01G004200.1 | Wheat | nucleus, plastid | 36.33 | 37.07 |
| TraesCS1D01G214000.1 | Wheat | mitochondrion, plastid | 17.17 | 29.76 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 27.74 | 28.9 |
| TraesCS6D01G230200.1 | Wheat | plastid | 15.57 | 27.86 |
| TraesCS4D01G361200.1 | Wheat | plastid | 16.37 | 26.62 |
| TraesCS4D01G215000.1 | Wheat | golgi | 22.55 | 26.16 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G580400.1 | EnsemblPlantsGene:TraesCS2D01G580400 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF21 | PFscan:PS50157 | ScanProsite:PS00028 |
| SEG:seg | SUPFAM:SSF56399 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:642332547..642334844
Molecular Weight (calculated)
52191.3 Da
IEP (calculated)
9.102
GRAVY (calculated)
-0.485
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEPSRSAGA KSSTTTTTVR KKKLTATSPA APKPDKEKLP DVGKKQQSSH GGPGAGAAAA ADSPSYRLAL RSLFSCRNSH AAQHQHSQRA APPQPAPAPA
101: DDASSRRCKK KSKKQTQLGC SASICKLRDA SPRRVTLHRP PAEEEPPSGA AAGAGDPCKR RASVSGGGER RVKKPLQQQQ PQQGQGNEAA GAVVVGSSSR
201: HWGSSTASSS SSTAGGGGSS FRLRRLSGCY ECHMVVDPAG GGSSMRAAIF PCPDCGDVFV RAESLHLHQA TRHAVSELGP EDTSRNIIEI IFQSSWLKKQ
301: TPVCAVDRIL KVHNAPATLA RFEAYRDAVK ARARGGRPGA GRCTADGNEL LRFHCAALAC SLGAGGATHL CDAAGSSCAA CGIVRDGFKF RAPGVRTMAT
401: SGRAHDDAVA VGGEEGEGGG GERRRAMLVC RVIAGRVKRR CEATAETAGK EEAEASPEED AEAEEEYDSV AGTAGVYSSL DELEVFNPTA ILPCFVVVYK
501: A
101: DDASSRRCKK KSKKQTQLGC SASICKLRDA SPRRVTLHRP PAEEEPPSGA AAGAGDPCKR RASVSGGGER RVKKPLQQQQ PQQGQGNEAA GAVVVGSSSR
201: HWGSSTASSS SSTAGGGGSS FRLRRLSGCY ECHMVVDPAG GGSSMRAAIF PCPDCGDVFV RAESLHLHQA TRHAVSELGP EDTSRNIIEI IFQSSWLKKQ
301: TPVCAVDRIL KVHNAPATLA RFEAYRDAVK ARARGGRPGA GRCTADGNEL LRFHCAALAC SLGAGGATHL CDAAGSSCAA CGIVRDGFKF RAPGVRTMAT
401: SGRAHDDAVA VGGEEGEGGG GERRRAMLVC RVIAGRVKRR CEATAETAGK EEAEASPEED AEAEEEYDSV AGTAGVYSSL DELEVFNPTA ILPCFVVVYK
501: A
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.