Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G111000.1 | Wheat | nucleus | 94.28 | 94.28 |
| TraesCS4A01G207500.1 | Wheat | nucleus | 93.36 | 94.01 |
| HORVU4Hr1G019890.1 | Barley | nucleus | 90.39 | 91.86 |
| Os11t0169400-01 | Rice | nucleus | 58.58 | 60.24 |
| KXG27839 | Sorghum | nucleus, plastid | 58.81 | 57.11 |
| Zm00001d053006_P001 | Maize | nucleus | 55.15 | 56.84 |
| GSMUA_Achr9P00350_001 | Banana | nucleus | 35.24 | 54.04 |
| Zm00001d004822_P001 | Maize | nucleus, plastid | 41.19 | 51.58 |
| PGSC0003DMT400074652 | Potato | plastid | 36.38 | 49.38 |
| GSMUA_Achr5P01120_001 | Banana | nucleus, plastid | 40.05 | 45.45 |
| KRH64726 | Soybean | nucleus | 42.79 | 43.9 |
| KRH53192 | Soybean | nucleus | 41.88 | 43.26 |
| Solyc11g013220.1.1 | Tomato | nucleus | 39.82 | 43.18 |
| VIT_18s0001g02000.t01 | Wine grape | nucleus, plastid | 32.04 | 41.54 |
| VIT_18s0001g03670.t01 | Wine grape | nucleus | 42.56 | 38.04 |
| TraesCS2D01G580400.1 | Wheat | nucleus | 41.19 | 35.93 |
| TraesCS2D01G004200.1 | Wheat | nucleus, plastid | 33.41 | 29.74 |
| TraesCS6D01G230200.1 | Wheat | plastid | 18.08 | 28.21 |
| TraesCS1D01G214000.1 | Wheat | mitochondrion, plastid | 18.54 | 28.03 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 29.06 | 26.4 |
| TraesCS4D01G361200.1 | Wheat | plastid | 17.62 | 25.0 |
| TraesCS4D01G215000.1 | Wheat | golgi | 24.26 | 24.54 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G108700.1 | EnsemblPlantsGene:TraesCS4D01G108700 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF21 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF56399 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:87963279..87964773
Molecular Weight (calculated)
45828.0 Da
IEP (calculated)
8.743
GRAVY (calculated)
-0.238
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATAAGKKM SIGGEKKEQR KSGSSFWGAM ALKSRSQPAG AVESKNSRSE RKTTTTTTKR SVSSIGRSMT CPGSICGTKE SAVLSRESCR NGGRNVSSSS
101: RSLKAPDNDI LSAPVVASGA VVSASSSFNS ETSVATTATT ASSSSSSSSA LSSPLSSIVA GSRSFRKLSG CYYECHSVLD PRTSLVGGAG MLPCSDCDEF
201: FVKAESLELH RATRHAVSEL GAEDTSRNVV EIIFQSSWLV GKPRAAPICR IERILKVHSS GKTVERFEQY RERVKANAAS STDELARRSF PRCAADGNEI
301: LRFHCTTFTC SLGLAGATSL CGSSPQHCKL CSIIRDGFRV DGDGKIVTMA TSGRAHDKAQ APLSSGGGGG GGGEKRAMLV CRVVAGRVKK LVDSSNSSEE
401: SGCDSVSSCS DLDELCVFNP MAILPCFVVM YTVATET
101: RSLKAPDNDI LSAPVVASGA VVSASSSFNS ETSVATTATT ASSSSSSSSA LSSPLSSIVA GSRSFRKLSG CYYECHSVLD PRTSLVGGAG MLPCSDCDEF
201: FVKAESLELH RATRHAVSEL GAEDTSRNVV EIIFQSSWLV GKPRAAPICR IERILKVHSS GKTVERFEQY RERVKANAAS STDELARRSF PRCAADGNEI
301: LRFHCTTFTC SLGLAGATSL CGSSPQHCKL CSIIRDGFRV DGDGKIVTMA TSGRAHDKAQ APLSSGGGGG GGGEKRAMLV CRVVAGRVKK LVDSSNSSEE
401: SGCDSVSSCS DLDELCVFNP MAILPCFVVM YTVATET
001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV
Arabidopsis Description
At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.