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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G108700.1 Wheat nucleus 94.28 94.28
TraesCS4A01G207500.1 Wheat nucleus 92.91 93.55
HORVU4Hr1G019890.1 Barley nucleus 89.02 90.47
Os11t0169400-01 Rice nucleus 58.12 59.76
KXG27839 Sorghum nucleus, plastid 58.81 57.11
Zm00001d053006_P001 Maize nucleus 55.15 56.84
GSMUA_Achr9P00350_001 Banana nucleus 35.01 53.68
Zm00001d004822_P001 Maize nucleus, plastid 41.65 52.15
PGSC0003DMT400074652 Potato plastid 35.93 48.76
GSMUA_Achr5P01120_001 Banana nucleus, plastid 40.27 45.71
KRH64726 Soybean nucleus 42.56 43.66
KRH53192 Soybean nucleus 41.65 43.03
Solyc11g013220.1.1 Tomato nucleus 39.36 42.68
VIT_18s0001g02000.t01 Wine grape nucleus, plastid 31.35 40.65
VIT_18s0001g03670.t01 Wine grape nucleus 42.11 37.63
TraesCS2B01G627700.1 Wheat nucleus 40.5 35.83
TraesCS6B01G276600.1 Wheat plastid 18.08 28.21
TraesCS1B01G224700.1 Wheat mitochondrion, plastid 18.54 27.65
TraesCS3B01G353600.1 Wheat nucleus 28.38 25.51
TraesCS4B01G214400.1 Wheat golgi 24.03 24.25
TraesCS4B01G369900.1 Wheat plastid 16.93 23.64
Protein Annotations
EnsemblPlants:TraesCS4B01G111000.1EnsemblPlantsGene:TraesCS4B01G111000Gene3D:3.90.228.10GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR013087InterPro:Znf_C2H2_typePANTHER:PTHR31681PANTHER:PTHR31681:SF21ScanProsite:PS00028SEG:seg
SUPFAM:SSF56399MapMan:15.5.15::::
Description
No Description!
Coordinates
chr4B:-:124562130..124563621
Molecular Weight (calculated)
46314.8 Da
IEP (calculated)
9.439
GRAVY (calculated)
-0.269
Length
437 amino acids
Sequence
(BLAST)
001: MDAPAAGKKM SIGGEKKEQR KSGSSFWRAM ALKSRSQPAG AVESKNSRSE RKKTTTTTKR SVSSIGRSMT CPGSICGTKE SAVLSRESER KNSGRNVSSS
101: SRSLKAPDND IMSVPVVASG AVVSASSSFN SETSVATTAT TVSSSSSSSS ALSSPLSSIV AGSRSFRKLS GCYYECHSVL DPRTSLVGGA GMLPCSDCDE
201: FFVKADSLEL HRATRHAVSE LGAEDTSRNV VEIIFQSSWL VGKPRAAPIC RIERILKVHS SGKTVERFEQ YRERVKAIAA SSTDELARRS FPRCAADGNE
301: ILRFHCTTFT CSLGLAGATS LCRSSPQHCK LCSIIRDGFR VDGDGKIATM ATSGRAHDKT QTPLSGGSGG GEKRAMLVCR VVAGRVKKLV NSSNSSEESS
401: GDSVSSCSDL DELSVFNPLA ILPCFVVMYT VATDIIT
Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.