Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G108700.1 | Wheat | nucleus | 94.28 | 94.28 |
TraesCS4A01G207500.1 | Wheat | nucleus | 92.91 | 93.55 |
HORVU4Hr1G019890.1 | Barley | nucleus | 89.02 | 90.47 |
Os11t0169400-01 | Rice | nucleus | 58.12 | 59.76 |
KXG27839 | Sorghum | nucleus, plastid | 58.81 | 57.11 |
Zm00001d053006_P001 | Maize | nucleus | 55.15 | 56.84 |
GSMUA_Achr9P00350_001 | Banana | nucleus | 35.01 | 53.68 |
Zm00001d004822_P001 | Maize | nucleus, plastid | 41.65 | 52.15 |
PGSC0003DMT400074652 | Potato | plastid | 35.93 | 48.76 |
GSMUA_Achr5P01120_001 | Banana | nucleus, plastid | 40.27 | 45.71 |
KRH64726 | Soybean | nucleus | 42.56 | 43.66 |
KRH53192 | Soybean | nucleus | 41.65 | 43.03 |
Solyc11g013220.1.1 | Tomato | nucleus | 39.36 | 42.68 |
VIT_18s0001g02000.t01 | Wine grape | nucleus, plastid | 31.35 | 40.65 |
VIT_18s0001g03670.t01 | Wine grape | nucleus | 42.11 | 37.63 |
TraesCS2B01G627700.1 | Wheat | nucleus | 40.5 | 35.83 |
TraesCS6B01G276600.1 | Wheat | plastid | 18.08 | 28.21 |
TraesCS1B01G224700.1 | Wheat | mitochondrion, plastid | 18.54 | 27.65 |
TraesCS3B01G353600.1 | Wheat | nucleus | 28.38 | 25.51 |
TraesCS4B01G214400.1 | Wheat | golgi | 24.03 | 24.25 |
TraesCS4B01G369900.1 | Wheat | plastid | 16.93 | 23.64 |
Protein Annotations
EnsemblPlants:TraesCS4B01G111000.1 | EnsemblPlantsGene:TraesCS4B01G111000 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF21 | ScanProsite:PS00028 | SEG:seg |
SUPFAM:SSF56399 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:124562130..124563621
Molecular Weight (calculated)
46314.8 Da
IEP (calculated)
9.439
GRAVY (calculated)
-0.269
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAPAAGKKM SIGGEKKEQR KSGSSFWRAM ALKSRSQPAG AVESKNSRSE RKKTTTTTKR SVSSIGRSMT CPGSICGTKE SAVLSRESER KNSGRNVSSS
101: SRSLKAPDND IMSVPVVASG AVVSASSSFN SETSVATTAT TVSSSSSSSS ALSSPLSSIV AGSRSFRKLS GCYYECHSVL DPRTSLVGGA GMLPCSDCDE
201: FFVKADSLEL HRATRHAVSE LGAEDTSRNV VEIIFQSSWL VGKPRAAPIC RIERILKVHS SGKTVERFEQ YRERVKAIAA SSTDELARRS FPRCAADGNE
301: ILRFHCTTFT CSLGLAGATS LCRSSPQHCK LCSIIRDGFR VDGDGKIATM ATSGRAHDKT QTPLSGGSGG GEKRAMLVCR VVAGRVKKLV NSSNSSEESS
401: GDSVSSCSDL DELSVFNPLA ILPCFVVMYT VATDIIT
101: SRSLKAPDND IMSVPVVASG AVVSASSSFN SETSVATTAT TVSSSSSSSS ALSSPLSSIV AGSRSFRKLS GCYYECHSVL DPRTSLVGGA GMLPCSDCDE
201: FFVKADSLEL HRATRHAVSE LGAEDTSRNV VEIIFQSSWL VGKPRAAPIC RIERILKVHS SGKTVERFEQ YRERVKAIAA SSTDELARRS FPRCAADGNE
301: ILRFHCTTFT CSLGLAGATS LCRSSPQHCK LCSIIRDGFR VDGDGKIATM ATSGRAHDKT QTPLSGGSGG GEKRAMLVCR VVAGRVKKLV NSSNSSEESS
401: GDSVSSCSDL DELSVFNPLA ILPCFVVMYT VATDIIT
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.