Factsheet for VIT_18s0001g03670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	55.21	80.12
KRH53192	Soybean	nucleus	59.92	69.27
KRH64726	Soybean	nucleus	60.33	69.25
PGSC0003DMT400074652	Potato	plastid	44.58	67.7
GSMUA_Achr6P17990_001	Banana	nucleus	34.56	65.76
GSMUA_Achr11P...	Banana	cytosol	35.99	65.19
GSMUA_Achr9P00350_001	Banana	nucleus	37.63	64.56
Solyc11g013220.1.1	Tomato	nucleus	52.97	64.27
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	40.7	60.12
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	44.99	57.14
GSMUA_Achr8P30300_001	Banana	nucleus	44.99	56.99
VIT_18s0001g14130.t01	Wine grape	vacuole	41.92	48.93
Os11t0169400-01	Rice	nucleus	38.65	44.47
KXG27839	Sorghum	nucleus, plastid	39.26	42.67
TraesCS4D01G108700.1	Wheat	nucleus	38.04	42.56
TraesCS4A01G207500.1	Wheat	nucleus	37.63	42.4
Zm00001d053006_P001	Maize	nucleus	36.61	42.22
TraesCS4B01G111000.1	Wheat	nucleus	37.63	42.11
HORVU4Hr1G019890.1	Barley	nucleus	36.4	41.4
VIT_06s0004g06240.t01	Wine grape	plastid	26.58	39.04
Zm00001d004822_P001	Maize	nucleus, plastid	27.61	38.68
VIT_00s1356g00010.t01	Wine grape	cytosol	29.86	37.82
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	30.27	34.5
VIT_02s0154g00220.t01	Wine grape	cytosol	20.04	34.27
VIT_19s0090g01730.t01	Wine grape	cytosol	12.68	32.98
VIT_08s0040g02390.t01	Wine grape	plasma membrane	11.04	31.58

Protein Annotations

EntrezGene:100257501	wikigene:100257501	MapMan:15.5.15	Gene3D:3.90.228.10	EMBL:AM458910	ProteinID:CAN65640
ProteinID:CAN65640.1	ProteinID:CCB45514	ProteinID:CCB45514.1	UniProt:F6H0L7	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	EntrezGene:LOC100257501	wikigene:LOC100257501	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21	SUPFAM:SSF56399	TMHMM:TMhelix	UniParc:UPI00019852EE
ArrayExpress:VIT_18s0001g03670	EnsemblPlantsGene:VIT_18s0001g03670	EnsemblPlants:VIT_18s0001g03670.t01	unigene:Vvi.16007	RefSeq:XP_002284394	RefSeq:XP_002284394.2
RefSeq:XP_002284394.3	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:3422279..3424214

Molecular Weight (calculated)

53707.8 Da

IEP (calculated)

9.940

GRAVY (calculated)

-0.430

Length

489 amino acids

Sequence
(BLAST)

001: MRIDESGKRT ISKSRSLQTQ GSSSATLPSL FFLVFSSGNA YGILKRKLFR ATLPVCLFEL KPHFQISPPM AKTRNPREVI KEIRTKQDQV PQKSEKPPSW
101: AVVRSLLTCK HLQTQPQQQK QEEGQQQKQR REQTVEGSGK KCKKMKCSGS LCSNTKVMHR PEMSSPEDHK KRPSMASSNN DGSSRSMKAP LSELNGVVSS
201: TSSSLSISAS SNSSVGGSFR GMPFRRLSGC YECRMVVDPV LGITRDPSLR TTICSCPDCG EIFMKAENLE LHQAVRHAVS ELGPEDTSKN IVEIIFQSSW
301: LKKQAPVCKI DRILKVHNTP KTISKFEEYR DSIKTKATKL QKKHPRCVAD GNELLRFHCT TFVCSIGLNG SSNLCNSIPS CSICSIIKNG FKVAGGVPGK
401: GILTTATSGK AHDSSRMSLP DDNEKRAMLV CRVIAGRVKK SATQLEGGVC TEEFDSVAGV GGVYSNLDEL YVSNPKAILP CFVVIYTES

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.