Factsheet for VIT_06s0004g06240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98330	Soybean	endoplasmic reticulum, golgi	64.86	56.54
PGSC0003DMT400078031	Potato	extracellular, vacuole	61.86	55.38
CDX97869	Canola	golgi	59.76	54.08
CDY02000	Canola	golgi	60.66	53.72
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	60.66	53.58
Solyc06g076820.1.1	Tomato	extracellular, vacuole	60.96	53.42
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	59.16	52.96
CDY51355	Canola	golgi	58.86	52.83
AT2G29660.1	Thale cress	golgi, plasma membrane	58.86	52.55
CDY45464	Canola	golgi	60.36	43.32
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	43.84	39.35
TraesCS4D01G215000.1	Wheat	golgi	45.65	35.19
TraesCS4B01G214400.1	Wheat	golgi	45.35	34.87
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	45.05	34.72
VIT_08s0040g02390.t01	Wine grape	plasma membrane	17.42	33.92
HORVU4Hr1G061070.1	Barley	golgi	44.74	33.86
EER92505	Sorghum	extracellular, plasma membrane	45.95	33.63
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	46.25	33.05
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	45.35	32.68
VIT_18s0001g14130.t01	Wine grape	vacuole	37.84	30.07
VIT_02s0154g00220.t01	Wine grape	cytosol	25.83	30.07
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	30.33	29.97
VIT_00s1356g00010.t01	Wine grape	cytosol	34.53	29.79
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	35.14	27.27
VIT_19s0090g01730.t01	Wine grape	cytosol	15.32	27.13
VIT_18s0001g03670.t01	Wine grape	nucleus	39.04	26.58

Protein Annotations

EntrezGene:100248366	wikigene:100248366	MapMan:15.5.15	Gene3D:3.30.160.60	Gene3D:3.90.228.10	ProteinID:CBI15987
ProteinID:CBI15987.3	UniProt:D7SK11	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	EntrezGene:LOC100248366	wikigene:LOC100248366	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR31681
PANTHER:PTHR31681:SF24	SUPFAM:SSF56399	UniParc:UPI0001BE0CCE	ArrayExpress:VIT_06s0004g06240	EnsemblPlantsGene:VIT_06s0004g06240	EnsemblPlants:VIT_06s0004g06240.t01
unigene:Vvi.15746	RefSeq:XP_002279930	RefSeq:XP_002279930.1	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:7023994..7025453

Molecular Weight (calculated)

36920.9 Da

IEP (calculated)

8.060

GRAVY (calculated)

-0.276

Length

333 amino acids

Sequence
(BLAST)

001: MDSRSRSRNA LSSSWFYLKK IFASKPCTAS MDTQPATATV SSARSSLHSV VSVVLPEMMV VSDPQRKVPT ATRPESDISA DHQFFPLRND IFPCPACGEV
101: FQKPQNLEQH QALKHAVSEL IDGDSGNNIV RIIFKTGWTD SEKIPKIQRI LKIHNSSKIL ARFEEYRESV KSKAARNGAV RRRDERCIAD GNELLRFHCS
201: TFLCNLGQNG NSSVCNHQYC SVCGIIRTGF SPKLDGISTL STSWRAHATI PEDIEDEFRF MNVKRAMLVC RVVAGRIGSD QDEVDKEDGG FDSVVGRSAI
301: GGGGSLTRLV DDEELLVFNP RSVLPCFVIV YSV

Best Arabidopsis Sequence Match ( AT2G29660.1 )
(BLAST)

001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV

Arabidopsis Description

At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.