Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018369.1-P | Field mustard | extracellular, golgi, plastid | 84.45 | 83.55 |
| CDY02000 | Canola | golgi | 84.18 | 83.51 |
| Bra039993.1-P | Field mustard | extracellular, golgi, plastid | 82.04 | 82.26 |
| CDX97869 | Canola | golgi | 80.97 | 82.07 |
| CDY51355 | Canola | golgi | 81.5 | 81.94 |
| CDY45464 | Canola | golgi | 84.45 | 67.89 |
| VIT_06s0004g06240.t01 | Wine grape | plastid | 52.55 | 58.86 |
| PGSC0003DMT400078031 | Potato | extracellular, vacuole | 52.81 | 52.96 |
| Solyc06g076820.1.1 | Tomato | extracellular, vacuole | 52.55 | 51.58 |
| KRG98330 | Soybean | endoplasmic reticulum, golgi | 52.81 | 51.57 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 39.68 | 39.89 |
| TraesCS4A01G089900.1 | Wheat | endoplasmic reticulum, golgi | 42.09 | 36.34 |
| TraesCS4D01G215000.1 | Wheat | golgi | 41.82 | 36.11 |
| TraesCS4B01G214400.1 | Wheat | golgi | 41.55 | 35.8 |
| HORVU4Hr1G061070.1 | Barley | golgi | 41.82 | 35.45 |
| EER92505 | Sorghum | extracellular, plasma membrane | 42.9 | 35.16 |
| Os03t0264600-00 | Rice | endoplasmic reticulum, nucleus | 42.9 | 34.33 |
| Zm00001d028537_P001 | Maize | endoplasmic reticulum, plasma membrane | 41.29 | 33.33 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 20.91 | 29.55 |
| AT1G62520.1 | Thale cress | nucleus | 21.98 | 29.29 |
| AT4G12450.1 | Thale cress | cytosol | 19.84 | 26.71 |
| AT1G75710.1 | Thale cress | nucleus | 32.71 | 26.41 |
| AT4G27240.1 | Thale cress | nucleus | 28.95 | 25.06 |
| AT1G11490.2 | Thale cress | mitochondrion | 24.13 | 24.66 |
| AT5G54630.1 | Thale cress | nucleus | 28.15 | 22.25 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.90.228.10 | EntrezGene:817516 | UniProt:A0A178VU27 | ProteinID:AAC35229.1 | ProteinID:AEC08289.1 |
| ArrayExpress:AT2G29660 | EnsemblPlantsGene:AT2G29660 | RefSeq:AT2G29660 | TAIR:AT2G29660 | RefSeq:AT2G29660-TAIR-G | EnsemblPlants:AT2G29660.1 |
| TAIR:AT2G29660.1 | EMBL:AY084379 | EMBL:AY120775 | Unigene:At.43819 | EMBL:BT008448 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0031225 | InterPro:IPR013087 | RefSeq:NP_565684.1 | UniProt:O82389 | ProteinID:OAP09314.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00028 | PFscan:PS50157 | PFscan:PS51257 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF24 |
| SUPFAM:SSF56399 | TMHMM:TMhelix | UniParc:UPI000005EAE1 | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
Coordinates
chr2:+:12678890..12680737
Molecular Weight (calculated)
41606.6 Da
IEP (calculated)
8.477
GRAVY (calculated)
-0.275
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.