Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29286 | Canola | nucleus | 79.81 | 83.7 |
| Bra026366.1-P | Field mustard | nucleus | 81.67 | 82.63 |
| CDX89265 | Canola | nucleus | 81.67 | 82.44 |
| KRH25897 | Soybean | cytosol | 32.71 | 79.21 |
| AT5G54630.1 | Thale cress | nucleus | 75.87 | 69.28 |
| KRH55605 | Soybean | cytosol | 67.98 | 66.44 |
| KRH22216 | Soybean | cytosol, plastid | 65.66 | 64.46 |
| KRH27121 | Soybean | cytosol, plastid | 64.97 | 64.22 |
| Solyc07g063970.2.1 | Tomato | cytosol, nucleus, peroxisome | 62.41 | 63.0 |
| VIT_19s0014g05000.t01 | Wine grape | cytosol, plastid | 62.65 | 62.94 |
| PGSC0003DMT400049491 | Potato | cytosol, nucleus, peroxisome | 62.65 | 62.79 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 60.09 | 53.85 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 59.86 | 53.2 |
| HORVU3Hr1G077490.2 | Barley | nucleus | 59.86 | 53.2 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 59.63 | 52.88 |
| TraesCS3A01G324600.1 | Wheat | nucleus | 59.63 | 50.69 |
| Zm00001d043243_P001 | Maize | nucleus | 59.16 | 50.49 |
| Zm00001d012605_P001 | Maize | nucleus | 58.24 | 50.1 |
| EES03733 | Sorghum | nucleus | 58.7 | 48.37 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 49.19 | 45.59 |
| AT1G11490.2 | Thale cress | mitochondrion | 35.73 | 42.19 |
| Zm00001d014485_P001 | Maize | nucleus, plastid | 41.53 | 40.87 |
| EER88828 | Sorghum | cytosol | 39.44 | 39.35 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 22.27 | 36.36 |
| AT1G62520.1 | Thale cress | nucleus | 22.97 | 35.36 |
| AT1G75710.1 | Thale cress | nucleus | 37.59 | 35.06 |
| AT4G12450.1 | Thale cress | cytosol | 21.81 | 33.94 |
| AT2G29660.1 | Thale cress | golgi, plasma membrane | 25.06 | 28.95 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.90.228.10 | EntrezGene:828832 | EMBL:AB493703 | ProteinID:AEE85315.1 | ArrayExpress:AT4G27240 |
| EnsemblPlantsGene:AT4G27240 | RefSeq:AT4G27240 | TAIR:AT4G27240 | RefSeq:AT4G27240-TAIR-G | EnsemblPlants:AT4G27240.1 | TAIR:AT4G27240.1 |
| EMBL:BT030059 | ProteinID:CAA19718.1 | ProteinID:CAB79579.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR013087 | RefSeq:NP_567769.1 | UniProt:O81827 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | ScanProsite:PS00028 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF19 | SUPFAM:SSF56399 | UniParc:UPI000009EF7C |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
At4g27240 [Source:UniProtKB/TrEMBL;Acc:O81827]
Coordinates
chr4:+:13639641..13642415
Molecular Weight (calculated)
47292.7 Da
IEP (calculated)
10.182
GRAVY (calculated)
-0.493
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MEASSTRSEK KKKKKTIQRE NTDTQKKKKL PSVWFSLKKS LPCKSDVSDV HIPRSKKELA PISTKRTTTS SGGGVGGRSG CSRSIANLKD VIHGNQRHLE
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.