Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049491 | Potato | cytosol, nucleus, peroxisome | 98.36 | 97.67 |
| KRH25897 | Soybean | cytosol | 34.66 | 83.15 |
| VIT_19s0014g05000.t01 | Wine grape | cytosol, plastid | 78.22 | 77.86 |
| KRH22216 | Soybean | cytosol, plastid | 79.16 | 76.99 |
| KRH55605 | Soybean | cytosol | 78.92 | 76.42 |
| KRH27121 | Soybean | cytosol, plastid | 77.52 | 75.92 |
| Solyc02g079920.2.1 | Tomato | cytosol | 65.11 | 66.03 |
| CDY29286 | Canola | nucleus | 63.47 | 65.94 |
| Bra026366.1-P | Field mustard | nucleus | 63.47 | 63.62 |
| CDX89265 | Canola | nucleus | 63.47 | 63.47 |
| CDY06635 | Canola | nucleus | 65.34 | 63.41 |
| CDY28761 | Canola | nucleus | 65.34 | 62.42 |
| AT4G27240.1 | Thale cress | nucleus | 63.0 | 62.41 |
| AT5G54630.1 | Thale cress | nucleus | 65.81 | 59.53 |
| Bra022735.1-P | Field mustard | nucleus | 65.81 | 59.41 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 67.45 | 59.38 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 66.04 | 58.63 |
| CDY18344 | Canola | nucleus | 61.12 | 57.62 |
| HORVU3Hr1G077490.2 | Barley | nucleus | 65.34 | 57.53 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 65.34 | 57.41 |
| Zm00001d043243_P001 | Maize | nucleus | 66.28 | 56.04 |
| Zm00001d012605_P001 | Maize | nucleus | 65.11 | 55.49 |
| TraesCS3A01G324600.1 | Wheat | nucleus | 65.11 | 54.83 |
| EES03733 | Sorghum | nucleus | 66.98 | 54.68 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 51.52 | 47.31 |
| EER88828 | Sorghum | cytosol | 43.56 | 43.06 |
| Zm00001d014485_P001 | Maize | nucleus, plastid | 42.86 | 41.78 |
| Solyc04g081370.2.1 | Tomato | extracellular, vacuole | 37.47 | 35.48 |
| Solyc08g079010.1.1 | Tomato | cytosol | 13.11 | 35.44 |
| Solyc11g013220.1.1 | Tomato | nucleus | 33.26 | 35.24 |
| Solyc06g076820.1.1 | Tomato | extracellular, vacuole | 28.34 | 31.84 |
Protein Annotations
| EnsemblPlants:Solyc07g063970.2.1 | EnsemblPlantsGene:Solyc07g063970.2 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF19 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF56399 | UniParc:UPI000276C220 | UniProt:K4CH80 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr7:-:66296445..66299198
Molecular Weight (calculated)
46562.8 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.416
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEKKNMPAV WFTLKRSLHC KSGPSDVHDP KTRKELSTIL TKKGGGRSGC SRSIANLKDV IHGSKRHLDK PPSCSPRSIG SSEFINPITH EVILSNSRCE
101: LKITSFNGFQ ESGNGGGGGV STNDGSTFVG TLRPGTPGPG GHPTMHYFNS GCRNTPTRRS TSFLVDKEGH TSSIASKTRY SLDNDVNGTS SGVTCHKCGE
201: QFGKWEALEE HHLSKHAVSE LLEGDSSRKI VEIICRSSWL KSESQVGRIE RILKVHNTQK TLARFEEYRE MVKNKASKLP KKHPRCIADG NELLRFYGTT
301: LACGLGMNGS CCLCISDKCC VCRIIRNGFS TKKELKGGIG VFTTSTSGSA YECIEMSEDD PSLRKALIVC RVVAGRVHRP LENIQEMAGQ TGFDSLAGKV
401: GVYSNIEELY LLNPKALLPC FVVICKA
101: LKITSFNGFQ ESGNGGGGGV STNDGSTFVG TLRPGTPGPG GHPTMHYFNS GCRNTPTRRS TSFLVDKEGH TSSIASKTRY SLDNDVNGTS SGVTCHKCGE
201: QFGKWEALEE HHLSKHAVSE LLEGDSSRKI VEIICRSSWL KSESQVGRIE RILKVHNTQK TLARFEEYRE MVKNKASKLP KKHPRCIADG NELLRFYGTT
301: LACGLGMNGS CCLCISDKCC VCRIIRNGFS TKKELKGGIG VFTTSTSGSA YECIEMSEDD PSLRKALIVC RVVAGRVHRP LENIQEMAGQ TGFDSLAGKV
401: GVYSNIEELY LLNPKALLPC FVVICKA
001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
Arabidopsis Description
AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.