Factsheet for TraesCS3B01G353600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G317900.1	Wheat	nucleus	95.68	96.67
HORVU3Hr1G077490.2	Barley	nucleus	93.83	94.02
TraesCS3A01G324600.1	Wheat	nucleus	92.18	88.36
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	83.54	83.71
Zm00001d043243_P001	Maize	nucleus	80.66	77.62
Zm00001d012605_P001	Maize	nucleus	78.19	75.85
EES03733	Sorghum	nucleus	80.86	75.14
KRH25897	Soybean	cytosol	27.16	74.16
GSMUA_Achr6P19070_001	Banana	cytosol	18.72	68.94
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	59.88	67.83
VIT_00s1356g00010.t01	Wine grape	cytosol	53.29	67.1
GSMUA_Achr6P24320_001	Banana	cytosol	46.3	66.77
KRH55605	Soybean	cytosol	59.88	65.99
GSMUA_Achr1P08590_001	Banana	nucleus	56.38	65.71
GSMUA_Achr9P24720_001	Banana	cytosol	48.77	65.65
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	58.02	65.58
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	57.41	65.34
GSMUA_Achr9P29950_001	Banana	cytosol	50.41	65.33
KRH22216	Soybean	cytosol, plastid	58.64	64.92
KRH27121	Soybean	cytosol, plastid	58.02	64.68
GSMUA_AchrUn_...	Banana	cytosol	47.74	64.44
PGSC0003DMT400055929	Potato	cytosol	54.94	64.03
Solyc02g079920.2.1	Tomato	cytosol	54.32	62.71
CDY06635	Canola	nucleus	55.76	61.59
CDY29286	Canola	nucleus	52.06	61.56
CDY28761	Canola	nucleus	56.58	61.52
AT4G27240.1	Thale cress	nucleus	52.88	59.63
Bra026366.1-P	Field mustard	nucleus	52.26	59.62
CDX89265	Canola	nucleus	52.26	59.48
Bra022735.1-P	Field mustard	nucleus	57.41	58.99
AT5G54630.1	Thale cress	nucleus	55.97	57.63
CDY18344	Canola	nucleus	52.88	56.73
GSMUA_Achr6P19060_001	Banana	nucleus	25.72	55.31
AT1G11490.2	Thale cress	mitochondrion	31.48	41.92
Bra019849.1-P	Field mustard	cytosol, mitochondrion	30.66	41.62
CDY49785	Canola	cytosol	30.25	41.06
CDX97964	Canola	cytosol	30.25	40.95
KRH10693	Soybean	nucleus	31.69	38.69
KRH21644	Soybean	nucleus	30.45	37.09
KRH58632	Soybean	nucleus	26.75	35.91
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	18.11	30.03
TraesCS6B01G276600.1	Wheat	plastid	16.67	28.93
TraesCS4B01G111000.1	Wheat	nucleus	25.51	28.38
TraesCS2B01G627700.1	Wheat	nucleus	28.6	28.14
TraesCS4B01G214400.1	Wheat	golgi	23.25	26.1
TraesCS4B01G369900.1	Wheat	plastid	15.23	23.64

Protein Annotations

EnsemblPlants:TraesCS3B01G353600.1	EnsemblPlantsGene:TraesCS3B01G353600	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF23	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF56399	MapMan:15.5.15	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:564043502..564045650

Molecular Weight (calculated)

50589.2 Da

IEP (calculated)

9.489

GRAVY (calculated)

-0.267

Length

486 amino acids

Sequence
(BLAST)

001: MGERRRRMSA VVGGDGRGEE KAAAPAPAPA PAPTVWFALK KSLQCRSQSS EVHVPKPKAS SSSAGSAGAG GHLSSIVTKR AARSGCSRSI ANLRDVIHGS
101: KRHPGQPPSC SPRSIGSSEF LNPIAHEVVL STNSRCELKI TGFGGCGGLG AAGGGAPAHE AEGGDGGVVS SFVGTLRPGT PGPGWSHGLQ YSGSCRAGSM
201: RCTPPRSPNP LLDRDGAAAA TAHRASCEVD AAKAGGKGSG GLSCHRCTEQ FGKWEALEAH HLSKHAVTEL VEGDSSRKIV EIICRTSLLK SESSCVRIER
301: VFKVHNTQRT LARFEEYREA VKLKASKLAK KHPRCLADGN ELLRFHGATL CCALGSAGAS SLCASDKCAV CRIIRHGFSS SSSPNAKKDG KASVGVFTTS
401: TSGRAFEAAD EEDDPAAAAG GARRALLVCR VIAGRVHKPL ENVREFVGQT GFDSLAGKVG PYANIEELYL LNPRALLPCF VVICKP

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.