Factsheet for VIT_19s0014g05000.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25897	Soybean	cytosol	36.36	87.64
KRH55605	Soybean	cytosol	85.08	82.77
KRH22216	Soybean	cytosol, plastid	84.62	82.69
KRH27121	Soybean	cytosol, plastid	83.22	81.88
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	79.25	79.07
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	77.86	78.22
VIT_00s1356g00010.t01	Wine grape	cytosol	69.93	77.72
CDY29286	Canola	nucleus	65.03	67.88
CDY06635	Canola	nucleus	68.3	66.59
CDY28761	Canola	nucleus	68.53	65.77
CDX89265	Canola	nucleus	65.27	65.57
Bra026366.1-P	Field mustard	nucleus	65.03	65.49
AT5G54630.1	Thale cress	nucleus	70.86	64.41
Bra022735.1-P	Field mustard	nucleus	70.4	63.85
AT4G27240.1	Thale cress	nucleus	62.94	62.65
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	70.16	62.06
CDY18344	Canola	nucleus	64.57	61.15
TraesCS3D01G317900.1	Wheat	nucleus	68.3	60.91
HORVU3Hr1G077490.2	Barley	nucleus	68.07	60.21
Zm00001d043243_P001	Maize	nucleus	70.63	60.0
TraesCS3B01G353600.1	Wheat	nucleus	67.83	59.88
Zm00001d012605_P001	Maize	nucleus	69.46	59.48
EES03733	Sorghum	nucleus	70.4	57.74
TraesCS3A01G324600.1	Wheat	nucleus	67.83	57.4
Os06t0683000-01	Rice	cytosol, nucleus, plastid	53.15	49.03
EER88828	Sorghum	cytosol	43.82	43.52
Zm00001d014485_P001	Maize	nucleus, plastid	43.82	42.92
VIT_18s0001g14130.t01	Wine grape	vacuole	37.53	38.42
VIT_08s0040g02390.t01	Wine grape	plasma membrane	15.15	38.01
VIT_19s0090g01730.t01	Wine grape	cytosol	16.55	37.77
VIT_02s0154g00220.t01	Wine grape	cytosol	24.71	37.06
VIT_06s0004g06240.t01	Wine grape	plastid	27.27	35.14
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	26.57	33.83
VIT_18s0001g03670.t01	Wine grape	nucleus	34.5	30.27

Protein Annotations

EntrezGene:100260605	wikigene:100260605	MapMan:15.5.15	Gene3D:3.90.228.10	EMBL:AM484096	ProteinID:CAN83989
ProteinID:CAN83989.1	ProteinID:CCB46470	ProteinID:CCB46470.1	UniProt:F6H2J0	EMBL:FN595229	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	EntrezGene:LOC100260605	wikigene:LOC100260605	ScanProsite:PS00028
PANTHER:PTHR31681	PANTHER:PTHR31681:SF19	SUPFAM:SSF56399	UniParc:UPI00019855E2	ArrayExpress:VIT_19s0014g05000	EnsemblPlantsGene:VIT_19s0014g05000
EnsemblPlants:VIT_19s0014g05000.t01	RefSeq:XP_002282818	RefSeq:XP_002282818.2	RefSeq:XP_010644321.1	InterPro:Znf_C2H2_type	SEG:seg

Description

No Description!

Coordinates

chr19:-:5329128..5331078

Molecular Weight (calculated)

46413.8 Da

IEP (calculated)

9.404

GRAVY (calculated)

-0.362

Length

429 amino acids

Sequence
(BLAST)

001: MPTVWLSLRR SLHCKSEPSD VHDPKARRQL STILTKKPCR SGCSRSIANL KDVIHGSKRH MEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKITGFG
101: GFQEGGGGGG GGGVGTGGGS TFVGTLRPGT PGPGGHPTMH YFKSPSTPPR KSPFLLSDRE GSGFGGSTIF GGGSGAIHSN NRASLDTDSN GTSAVTCHKC
201: GEQFSKWEAV ETHHLSKHAV TELVEGDSSR KIVEIICRTS WLKSENHCGR IERVLKVHNM QKTLGRFEEY REMVKTKASK LPKKHPRCLA DGNELLRFYG
301: TTMTCALGVN GSSNLCISDK CCVCRIIRHG FSAKKELKGG IGVFTTSTSG RAFESIEVYD EDPSIRKALI VCRVIAGRVH RPLENIQDMA GQSGFDSLAG
401: KVGLYSNIEE LYLLNPRALL PCFVVICKP

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.