CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014485_P001	Maize	nucleus, plastid	79.86	78.77
KRH25897	Soybean	cytosol	25.0	60.67
GSMUA_Achr6P19070_001	Banana	cytosol	18.06	59.09
GSMUA_Achr6P24320_001	Banana	cytosol	38.66	49.55
VIT_00s1356g00010.t01	Wine grape	cytosol	43.98	49.22
Os06t0683000-01	Rice	cytosol, nucleus, plastid	52.31	48.6
GSMUA_Achr9P29950_001	Banana	cytosol	41.9	48.27
GSMUA_AchrUn_...	Banana	cytosol	38.43	46.11
GSMUA_Achr9P24720_001	Banana	cytosol	37.96	45.43
KRH27121	Soybean	cytosol, plastid	44.91	44.5
GSMUA_Achr1P08590_001	Banana	nucleus	42.82	44.36
KRH22216	Soybean	cytosol, plastid	44.68	43.96
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	43.75	43.95
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	43.52	43.82
PGSC0003DMT400055929	Potato	cytosol	42.13	43.65
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	43.06	43.56
KRH55605	Soybean	cytosol	43.75	42.86
Solyc02g079920.2.1	Tomato	cytosol	41.2	42.28
CDY29286	Canola	nucleus	39.81	41.85
Bra026366.1-P	Field mustard	nucleus	39.81	40.38
CDX89265	Canola	nucleus	39.81	40.28
CDY28761	Canola	nucleus	40.97	39.6
AT4G27240.1	Thale cress	nucleus	39.35	39.44
CDY06635	Canola	nucleus	40.05	39.32
AT5G54630.1	Thale cress	nucleus	42.59	38.98
CDY18344	Canola	nucleus	40.05	38.19
Bra022735.1-P	Field mustard	nucleus	41.67	38.05
AT1G11490.2	Thale cress	mitochondrion	30.56	36.16
Bra019849.1-P	Field mustard	cytosol, mitochondrion	29.86	36.03
EES03733	Sorghum	nucleus	43.52	35.95
CDX97964	Canola	cytosol	29.86	35.93
CDY49785	Canola	cytosol	29.4	35.47
GSMUA_Achr6P19060_001	Banana	nucleus	17.59	33.63
KRH10693	Soybean	nucleus	28.94	31.41
KRH21644	Soybean	nucleus	28.01	30.33
KRH58632	Soybean	nucleus	24.31	29.01
KXG31078	Sorghum	plastid	18.29	25.0
EES11701	Sorghum	nucleus	27.78	24.24
KXG38947	Sorghum	mitochondrion	17.82	24.06
KXG27839	Sorghum	nucleus, plastid	25.0	24.0
EER92505	Sorghum	extracellular, plasma membrane	22.92	21.76
EES10376	Sorghum	nucleus	24.07	19.19

Protein Annotations

EnsemblPlants:EER88828	EnsemblPlantsGene:SORBI_3010G233300	EntrezGene:8083302	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR31681	PANTHER:PTHR31681:SF7
ProteinID:EER88828	ProteinID:EER88828.1	RefSeq:XP_002437461.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399
UniParc:UPI0001A88FD5	UniProt:C5Z871	MapMan:15.5.15	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:57600714..57602115

Molecular Weight (calculated)

45750.5 Da

IEP (calculated)

8.223

GRAVY (calculated)

-0.125

Length

432 amino acids

Sequence
(BLAST)

001: MAILWWTALK RSLSCKSQGS CDVIKRDDPD SRGGSAREFN HKKPSFLLQP SSLSMPRSGC SRSISNLRDV IHSARFQAPP APAARAKCDS PMSVESGDVL
101: SAVTTHDVLL ATGSRRDVLV GAGAVASPGL AAWDIGAVPP FAHSPLLTRC ATGARLSQRK SPLRLGTGVY GDAGSPLPAW ASCVEVAVRC NRCDGLFPND
201: SALESHHLVY HAVSEVVDGE TASKVVELIY SAGWPNPEAA LDRVERVVKV HSLERRVDRF KEYMEEVKGR AAKLPNNNKH PRCVADGNEL LQFHGTTVSC
301: SLGAGGSHSV CTSSLCNVCR IIRHGFSRNG GVGVFTTSTS KHALDCLQET GAAGGGTGED GPADGGVKHA LFVCRVIAGR IHRPLEKLRQ DAAVQPGFDS
401: VAGQVGGDSS IEELYLLNPS ALLPCFVVIC KA

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.