CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043243_P001	Maize	nucleus	88.34	91.49
Zm00001d012605_P001	Maize	nucleus	83.75	87.43
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	77.44	83.51
TraesCS3D01G317900.1	Wheat	nucleus	74.76	81.29
TraesCS3B01G353600.1	Wheat	nucleus	75.14	80.86
HORVU3Hr1G077490.2	Barley	nucleus	74.95	80.82
KRH25897	Soybean	cytosol	26.2	76.97
TraesCS3A01G324600.1	Wheat	nucleus	74.38	76.73
GSMUA_Achr6P19070_001	Banana	cytosol	18.16	71.97
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	57.74	70.4
GSMUA_Achr6P24320_001	Banana	cytosol	44.93	69.73
VIT_00s1356g00010.t01	Wine grape	cytosol	50.48	68.39
KRH55605	Soybean	cytosol	56.79	67.35
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	55.26	67.21
GSMUA_Achr1P08590_001	Banana	nucleus	53.54	67.15
GSMUA_Achr9P24720_001	Banana	cytosol	46.27	67.04
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	54.68	66.98
KRH22216	Soybean	cytosol, plastid	56.21	66.97
GSMUA_Achr9P29950_001	Banana	cytosol	47.8	66.67
KRH27121	Soybean	cytosol, plastid	55.45	66.51
GSMUA_AchrUn_...	Banana	cytosol	44.74	65.0
PGSC0003DMT400055929	Potato	cytosol	51.24	64.27
Solyc02g079920.2.1	Tomato	cytosol	51.24	63.66
CDY29286	Canola	nucleus	48.95	62.29
CDY06635	Canola	nucleus	51.43	61.14
CDY28761	Canola	nucleus	52.01	60.85
Bra026366.1-P	Field mustard	nucleus	48.76	59.86
CDX89265	Canola	nucleus	48.76	59.72
AT4G27240.1	Thale cress	nucleus	48.37	58.7
AT5G54630.1	Thale cress	nucleus	52.77	58.47
Bra022735.1-P	Field mustard	nucleus	52.77	58.35
CDY18344	Canola	nucleus	49.33	56.95
GSMUA_Achr6P19060_001	Banana	nucleus	23.14	53.54
AT1G11490.2	Thale cress	mitochondrion	30.4	43.56
EER88828	Sorghum	cytosol	35.95	43.52
Bra019849.1-P	Field mustard	cytosol, mitochondrion	29.06	42.46
CDX97964	Canola	cytosol	28.87	42.06
CDY49785	Canola	cytosol	28.49	41.62
KRH10693	Soybean	nucleus	29.83	39.2
KRH21644	Soybean	nucleus	28.87	37.84
KRH58632	Soybean	nucleus	25.24	36.46
EES11701	Sorghum	nucleus	28.87	30.51
KXG27839	Sorghum	nucleus, plastid	24.47	28.44
KXG38947	Sorghum	mitochondrion	16.63	27.19
EES10376	Sorghum	nucleus	27.72	26.75
KXG31078	Sorghum	plastid	15.68	25.95
EER92505	Sorghum	extracellular, plasma membrane	22.18	25.49

Protein Annotations

EnsemblPlants:EES03733	EnsemblPlantsGene:SORBI_3003G320300	EntrezGene:8054725	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19	PFscan:PS50157
ProteinID:EES03733	ProteinID:EES03733.1	RefSeq:XP_002458613.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399
UniParc:UPI0001A85706	UniProt:C5XLS9	MapMan:15.5.15	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:64808031..64810619

Molecular Weight (calculated)

53428.6 Da

IEP (calculated)

10.076

GRAVY (calculated)

-0.232

Length

523 amino acids

Sequence
(BLAST)

001: MGERRRRASA ASFGGGGGGG GGGSVVPARA EEGKAAAPGK APPPTVWFAL KRSLHCRSEP SEVHVPRAKA AGPVAAGGAA VGGGGHLSSI VTTKRATRSG
101: CSRSIANLRD VIHGSKRHPG QPPSSCSPRS IGSSEFLNPI AHEVVLSTNS RCELKITGFG AGCGGLAAVG VGGGTGAGAG AGGAHDADSG GVVSSFVGTL
201: RPGTPGPAWA GAGGHGLPYS GSVRGGGGVR CTPPRSPNVL LERNGSVVNG NGHRVSCDET GTKHGAGKGS GGLSCHRCGE QFSKWEALEA HHLSKHAVTE
301: LLEGDSSRKI VEIICRTSLL KSESSCVRIE RVFKVHNTQR TLSRFEEYRE AVKLKASKLP KKHPRCLADG NELLRFHGAT LSCALGGAGS GNSSLCASDK
401: CAVCRIIRHG FSAKKEGKAG VGVFTTSTSG RAFESIEAAP GPGAGDDGAD QLQLGTTTTR KALLVCRVIA GRVHKPLDNL KEFVGQTGFD SLAGKVGPYS
501: NIEELYLLNP RALLPCFVVI CKP

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.