Factsheet for VIT_00s1356g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	77.72	69.93
PGSC0003DMT400055929	Potato	cytosol	74.87	69.3
Solyc02g079920.2.1	Tomato	cytosol	74.61	68.41
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	69.17	55.05
TraesCS3D01G317900.1	Wheat	nucleus	67.88	54.47
HORVU3Hr1G077490.2	Barley	nucleus	67.88	54.02
TraesCS3B01G353600.1	Wheat	nucleus	67.1	53.29
Zm00001d012605_P001	Maize	nucleus	68.65	52.89
Zm00001d043243_P001	Maize	nucleus	69.17	52.87
TraesCS3A01G324600.1	Wheat	nucleus	67.62	51.48
EES03733	Sorghum	nucleus	68.39	50.48
Os06t0683000-01	Rice	cytosol, nucleus, plastid	57.77	47.96
EER88828	Sorghum	cytosol	49.22	43.98
Zm00001d014485_P001	Maize	nucleus, plastid	48.7	42.92
VIT_18s0001g14130.t01	Wine grape	vacuole	40.41	37.23
VIT_19s0090g01730.t01	Wine grape	cytosol	17.88	36.7
VIT_02s0154g00220.t01	Wine grape	cytosol	26.17	35.31
VIT_06s0004g06240.t01	Wine grape	plastid	29.79	34.53
VIT_08s0040g02390.t01	Wine grape	plasma membrane	15.03	33.92
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	27.98	32.05
VIT_18s0001g03670.t01	Wine grape	nucleus	37.82	29.86

Protein Annotations

ArrayExpress:VIT_00s1356g00010	EMBL:FN596839	EnsemblPlants:VIT_00s1356g00010.t01	EnsemblPlantsGene:VIT_00s1356g00010	Gene3D:3.90.228.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19
ProteinID:CBI41096	ProteinID:CBI41096.3	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0001BE5214
UniProt:D7UED2	MapMan:15.5.15	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:38774552..38775937

Molecular Weight (calculated)

41934.5 Da

IEP (calculated)

9.755

GRAVY (calculated)

-0.294

Length

386 amino acids

Sequence
(BLAST)

001: MPAVWFALKR SLHCKSEPSD VYDPKAGSNL SAILTKKTGR SGCSRSISNL KDVIHGSKRH IEKPATCSPR SIGSSELLNP ITHEVVLNNS TCELKITGFG
101: GHHIVPYPNP RRSASQPRRP PTGSASFGVT GRGVPSHPRA SLGAASNSSS SVTCHKCGEQ FKKLESVEEH HLSKHAVTEL VEGDSSRKIV EIICRTSWLK
201: SENSCGRIER VLKVHNMQKT LARFEEYREI VKIKASKLPK KHPRCLADGN ELLRFHGTTI ACSLGMNGSS SLCTSDKCSV CRILRHGFST KKEVNGGVGV
301: FTTSTSGSAF ESIKLNEENQ SVGRALIVCR VIAGRVHRPL ENIQELAGQS GFDSLAGKVG VYSNIEELYL LNPIALLPCF VVICKP

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.