Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055929 | Potato | cytosol | 95.72 | 96.64 |
| VIT_00s1356g00010.t01 | Wine grape | cytosol | 68.41 | 74.61 |
| Solyc07g063970.2.1 | Tomato | cytosol, nucleus, peroxisome | 66.03 | 65.11 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 62.95 | 55.09 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 63.42 | 55.05 |
| HORVU3Hr1G077490.2 | Barley | nucleus | 62.71 | 54.43 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 62.71 | 54.32 |
| Zm00001d043243_P001 | Maize | nucleus | 64.13 | 53.47 |
| Zm00001d012605_P001 | Maize | nucleus | 63.18 | 53.09 |
| TraesCS3A01G324600.1 | Wheat | nucleus | 63.18 | 52.47 |
| EES03733 | Sorghum | nucleus | 63.66 | 51.24 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 50.59 | 45.81 |
| Zm00001d014485_P001 | Maize | nucleus, plastid | 42.99 | 41.32 |
| EER88828 | Sorghum | cytosol | 42.28 | 41.2 |
| Solyc08g079010.1.1 | Tomato | cytosol | 13.06 | 34.81 |
| Solyc11g013220.1.1 | Tomato | nucleus | 30.88 | 32.26 |
| Solyc04g081370.2.1 | Tomato | extracellular, vacuole | 34.2 | 31.93 |
| Solyc06g076820.1.1 | Tomato | extracellular, vacuole | 27.55 | 30.53 |
Protein Annotations
| EnsemblPlants:Solyc02g079920.2.1 | EnsemblPlantsGene:Solyc02g079920.2 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF23 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF56399 | UniParc:UPI0002768C1F | UniProt:K4B9L3 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr2:-:44312276..44314406
Molecular Weight (calculated)
45680.0 Da
IEP (calculated)
9.672
GRAVY (calculated)
-0.368
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAVWFALKK SLQCRSEIKD VYDPRSEGKN LSKISTKKAT TGRSGCSRSI ANLKDVIHGS KRHMEKPPLQ SPRSIGSSEL LNPITHEVVL SNSTCELKIT
101: SCNFQDGNGN GSSGNNVESI SAFMGTLKPG TPGPGGHHIG SSRKYRGFGS PIRKGSPGNL SRKTGPGFGG NVSRPKASYG ADSHGLTCHK CGEQFVKWEA
201: VETHHLSKHA VTELVEGDSS RKIVEIICRT SCSKPENSSN GIERILKVHN MQKVLAQFEE YRELVKIKAS KLAKKHPRCL ADGNELLRFF GTTVECSLGM
301: NSSSSLCTSE KCKVCRILQR GFSIKKEING GVGVFTASTS GRALEAIEEN DENILSCRKA LIVCRVIAGR VHRPLENVQE LMGQSGFDSL AGKVGLYSNI
401: EELYLLSPKA LLPCFVVICK S
101: SCNFQDGNGN GSSGNNVESI SAFMGTLKPG TPGPGGHHIG SSRKYRGFGS PIRKGSPGNL SRKTGPGFGG NVSRPKASYG ADSHGLTCHK CGEQFVKWEA
201: VETHHLSKHA VTELVEGDSS RKIVEIICRT SCSKPENSSN GIERILKVHN MQKVLAQFEE YRELVKIKAS KLAKKHPRCL ADGNELLRFF GTTVECSLGM
301: NSSSSLCTSE KCKVCRILQR GFSIKKEING GVGVFTASTS GRALEAIEEN DENILSCRKA LIVCRVIAGR VHRPLENVQE LMGQSGFDSL AGKVGLYSNI
401: EELYLLSPKA LLPCFVVICK S
001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP
Arabidopsis Description
AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.