Factsheet for HORVU3Hr1G077490.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G317900.1	Wheat	nucleus	93.4	94.18
TraesCS3B01G353600.1	Wheat	nucleus	94.02	93.83
TraesCS3A01G324600.1	Wheat	nucleus	90.93	86.98
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	82.68	82.68
Zm00001d043243_P001	Maize	nucleus	80.62	77.43
Zm00001d012605_P001	Maize	nucleus	79.18	76.65
KRH25897	Soybean	cytosol	27.63	75.28
EES03733	Sorghum	nucleus	80.82	74.95
GSMUA_Achr6P19070_001	Banana	cytosol	19.38	71.21
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	60.21	68.07
VIT_00s1356g00010.t01	Wine grape	cytosol	54.02	67.88
GSMUA_Achr6P24320_001	Banana	cytosol	46.8	67.36
GSMUA_Achr9P24720_001	Banana	cytosol	49.69	66.76
KRH55605	Soybean	cytosol	60.21	66.21
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	58.14	65.58
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	57.53	65.34
GSMUA_Achr1P08590_001	Banana	nucleus	55.88	64.99
GSMUA_Achr9P29950_001	Banana	cytosol	50.1	64.8
KRH22216	Soybean	cytosol, plastid	58.56	64.69
KRH27121	Soybean	cytosol, plastid	57.94	64.45
PGSC0003DMT400055929	Potato	cytosol	55.05	64.03
GSMUA_AchrUn_...	Banana	cytosol	47.42	63.89
Solyc02g079920.2.1	Tomato	cytosol	54.43	62.71
CDY29286	Canola	nucleus	52.99	62.53
CDY06635	Canola	nucleus	55.46	61.14
CDY28761	Canola	nucleus	56.29	61.07
Bra026366.1-P	Field mustard	nucleus	53.2	60.56
CDX89265	Canola	nucleus	53.2	60.42
AT4G27240.1	Thale cress	nucleus	53.2	59.86
Bra022735.1-P	Field mustard	nucleus	57.32	58.77
AT5G54630.1	Thale cress	nucleus	56.7	58.26
CDY18344	Canola	nucleus	52.99	56.73
GSMUA_Achr6P19060_001	Banana	nucleus	25.36	54.42
AT1G11490.2	Thale cress	mitochondrion	31.96	42.47
Bra019849.1-P	Field mustard	cytosol, mitochondrion	31.13	42.18
CDY49785	Canola	cytosol	30.72	41.62
CDX97964	Canola	cytosol	30.72	41.5
KRH10693	Soybean	nucleus	32.16	39.2
KRH21644	Soybean	nucleus	31.13	37.84
KRH58632	Soybean	nucleus	26.8	35.91
HORVU2Hr1G125620.2	Barley	nucleus	7.42	35.64
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	17.73	29.25
HORVU6Hr1G063400.2	Barley	plastid	16.91	29.18
HORVU4Hr1G019890.1	Barley	nucleus	25.15	28.37
HORVU4Hr1G061070.1	Barley	golgi	23.92	26.36

Protein Annotations

EMBL:AK374453	EnsemblPlants:HORVU3Hr1G077490.2	EnsemblPlantsGene:HORVU3Hr1G077490	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF23	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF56399	UniParc:UPI00020088B3	UniProt:F2EE77	MapMan:15.5.15	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EE77]

Coordinates

chrchr3H:+:573264298..573267018

Molecular Weight (calculated)

50823.2 Da

IEP (calculated)

9.596

GRAVY (calculated)

-0.364

Length

485 amino acids

Sequence
(BLAST)

001: MGERRRRASA VAGGDGQRGE EKAAAPAPAP TVWFALKKSL QCRSQSSEVH VPKPKPSSSS SSSASVGNGG HLSSIVTKRA ARSGCSRSIA NLRDVIHGSK
101: RHPGQPPSCS PRSIGSSEFL NPIAHEVVLS TNSRCELKIT GFGGCGGLGA SGGGAPAHDA DGGDGGGVVS SFVGTLRPGT PGPGWSHGLQ YSGSCRAGSM
201: RCTPPRSPNP LLDRDGATAP TTHRASCEVD APKTGDKGSG GLSCHRCPEQ FSKWEALEAH HLSKHAVTEL VEGDSSRKIV EIICRTSLLK SESSCVRIER
301: VFKVHNTQRT LARFEEYREA VKLKASKLPK KHPRCLADGN ELLRFHGATL SCALGSAGAS SLCASDKCAV CRIIRHGFSS SSNSNSKKEG KASVGVFTTS
401: TSGRAFESAD EEDAPAAAGG ARRALLVCRV IAGRVHKPLE NVREFVGQTG FDSLAGKVGP YANIEELYLL NPRALLPCFV VICKP

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.