Factsheet for Bra022735.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28761	Canola	nucleus	93.87	99.33
AT5G54630.1	Thale cress	nucleus	85.84	86.02
KRH25897	Soybean	cytosol	29.81	79.21
Bra026366.1-P	Field mustard	nucleus	68.29	75.82
KRH55605	Soybean	cytosol	67.44	72.34
KRH22216	Soybean	cytosol, plastid	65.75	70.84
KRH27121	Soybean	cytosol, plastid	64.9	70.41
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	63.85	70.4
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	60.25	66.28
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	59.41	65.81
TraesCS3D01G317900.1	Wheat	nucleus	59.62	58.63
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	59.41	57.94
TraesCS3B01G353600.1	Wheat	nucleus	58.99	57.41
HORVU3Hr1G077490.2	Barley	nucleus	58.77	57.32
Zm00001d012605_P001	Maize	nucleus	58.14	54.89
Zm00001d043243_P001	Maize	nucleus	58.56	54.85
TraesCS3A01G324600.1	Wheat	nucleus	58.77	54.83
EES03733	Sorghum	nucleus	58.35	52.77
Os06t0683000-01	Rice	cytosol, nucleus, plastid	47.15	47.96
Zm00001d014485_P001	Maize	nucleus, plastid	38.69	41.78
EER88828	Sorghum	cytosol	38.05	41.67
Bra019849.1-P	Field mustard	cytosol, mitochondrion	31.29	41.34
Bra020842.1-P	Field mustard	cytosol	20.08	36.82
Bra015598.1-P	Field mustard	plastid	31.92	36.04
Bra027038.1-P	Field mustard	cytosol, plastid	20.08	35.98
Bra029455.1-P	Field mustard	cytosol	20.72	35.25
Bra014094.1-P	Field mustard	plastid	30.87	34.93
Bra008218.1-P	Field mustard	nucleus	32.77	34.75
Bra015824.1-P	Field mustard	nucleus	33.4	34.13
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	24.1	30.65
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	23.47	29.44

Protein Annotations

EnsemblPlants:Bra022735.1	EnsemblPlants:Bra022735.1-P	EnsemblPlantsGene:Bra022735	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002546689	UniProt:M4E1T5	MapMan:15.5.15	:

Description

AT5G54630 (E=2e-192) | zinc finger protein-related

Coordinates

chrA02:+:7714951..7716809

Molecular Weight (calculated)

51338.5 Da

IEP (calculated)

10.140

GRAVY (calculated)

-0.440

Length

473 amino acids

Sequence
(BLAST)

001: MDDSNTRSQT KKTKKLQKDK NKNKKNNIPT VWFSLKKSLH CKSEPSDVHV PKSTKHLTTI STKRISTANS SLPSAGCGGG LSGCSRSIAN LKDVIHGSKR
101: HFEKPPISSP RSIGSNEFLN PITHEVILSN STCELKITGV GDMASPAGAT ESGGGGGGNG RATTFVGMLR PGTPMHHLNH SASHRSHASS TAAKKGSFAS
201: SEREVTGEGF HTKRRVSLEM NRDSAVNGGK YSVSCHKCGE QFSKLEAAEA HHLSKHAVTE LVEGDSSRKI VEIICRTSWL KSENQCGRID RVLKVHNMQK
301: TLARFEEYRE TVKIRASKLQ KKHPRCLADG NELLRFHGTT VACGLGINGS TSLCTAEKCC VCRIIRNGFS AKREKNNGVG VFTASTSGRA FESILVEEGD
401: GERTVTVRKV LIVCRVIAGR VHRPVENVEE VNGLMMSGFD SLAGKVGLYT NVEELYLLNP RALLPCFVVI CKS

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.