Factsheet for Bra029455.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000943.1-P
Bra015422.1-P
Bra017007.1-P
Bra017974.1-P
Bra018081.1-P
Bra032176.1-P
Bra033769.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	Bra015422.1-P	AT1G05410.1	21798944
AT4G12450.1	Bra017007.1-P	AT2G19650.1	21798944
AT4G12450.1	Bra032176.1-P	AT2G23290.1	21798944
AT4G12450.1	Bra018081.1-P	AT3G48150.1	21798944
AT4G12450.1	Bra033769.1-P	AT3G48150.1	21798944
AT4G12450.1	Bra017974.1-P	AT3G49580.1	21798944
AT4G12450.1	Bra000943.1-P	AT4G01090.1	21798944
AT4G12450.1	Bra037384.1-P	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16714	Canola	cytosol	100.0	100.0
CDY63658	Canola	cytosol	98.56	98.56
AT4G12450.1	Thale cress	cytosol	85.61	85.92
Bra020842.1-P	Field mustard	cytosol	69.06	74.42
Solyc08g079010.1.1	Tomato	cytosol	33.45	58.86
VIT_02s0154g00220.t01	Wine grape	cytosol	55.4	53.85
Bra027038.1-P	Field mustard	cytosol, plastid	50.36	53.03
KRH28045	Soybean	mitochondrion	54.32	52.98
KRH77393	Soybean	mitochondrion	52.88	51.76
PGSC0003DMT400012224	Potato	nucleus	54.68	50.84
KRH04088	Soybean	cytosol	51.44	49.14
KRH57359	Soybean	cytosol	50.36	48.95
Os10t0554001-01	Rice	cytosol	31.3	47.8
GSMUA_Achr5P15290_001	Banana	nucleus	42.09	46.06
GSMUA_Achr2P10020_001	Banana	cytosol	43.88	45.52
GSMUA_Achr4P27010_001	Banana	plastid	45.32	44.06
TraesCS5A01G536800.1	Wheat	cytosol	30.22	43.75
GSMUA_Achr1P01700_001	Banana	nucleus	46.4	43.73
GSMUA_Achr7P07110_001	Banana	cytosol	42.81	43.12
GSMUA_Achr4P30380_001	Banana	cytosol	42.45	41.7
TraesCS6A01G248100.1	Wheat	plastid	41.01	41.16
TraesCS6B01G276600.1	Wheat	plastid	41.01	40.71
TraesCS6D01G230200.1	Wheat	plastid	41.01	40.71
Zm00001d017504_P001	Maize	mitochondrion	42.09	39.93
HORVU6Hr1G063400.2	Barley	plastid	40.29	39.86
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	41.01	38.64
KXG31078	Sorghum	plastid	41.73	36.71
KRH37293	Soybean	plastid	20.14	36.36
Os02t0661600-00	Rice	mitochondrion	39.57	35.95
Zm00001d047106_P001	Maize	plastid	38.13	35.81
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	35.97	34.6
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	35.97	34.13
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	35.97	34.13
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	35.97	34.01
Zm00001d029869_P001	Maize	mitochondrion	37.05	33.55
KXG38947	Sorghum	mitochondrion	37.05	32.19
TraesCS4D01G361200.1	Wheat	plastid	35.25	31.82
TraesCS4B01G369900.1	Wheat	plastid	35.25	31.31
Bra019849.1-P	Field mustard	cytosol, mitochondrion	29.5	22.91
Bra026366.1-P	Field mustard	nucleus	34.53	22.54
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	28.06	20.97
Bra015598.1-P	Field mustard	plastid	31.3	20.76
Bra022735.1-P	Field mustard	nucleus	35.25	20.72
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	28.06	20.69
Bra014094.1-P	Field mustard	plastid	30.94	20.57
Bra015824.1-P	Field mustard	nucleus	33.45	20.09
Bra008218.1-P	Field mustard	nucleus	31.65	19.73

Protein Annotations

EnsemblPlants:Bra029455.1	EnsemblPlants:Bra029455.1-P	EnsemblPlantsGene:Bra029455	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12
SEG:seg	SUPFAM:SSF56399	UniParc:UPI000254278A	UniProt:M4EKY8	MapMan:15.5.15	:

Description

AT4G12450 (E=3e-118) | unknown protein

Coordinates

chrA09:+:17929632..17930468

Molecular Weight (calculated)

30291.6 Da

IEP (calculated)

8.574

GRAVY (calculated)

-0.474

Length

278 amino acids

Sequence
(BLAST)

001: MPIGWVKSLH CKSRAFDDVY HHSNNGKLSL PSYSCRKSVK DVIDTRPTQQ GSGDKNLKPD ANLRRLRSSR RPESECNSSY NPTRRSVSAR ASTESAALPV
101: LTDLPDGHPS RNVVEIIFQS SWSSEEFPGR VEMIFKVENG SRAVTRFEEY REAVKLRSRS NFDSDDGACD EDARCSADGN EMMRFYPLGP IPGGINGGAW
201: VFPGGKGAAV CTFSGSGEAH DSTGGGGGRR AMLICRVIAG RVAKKGEFGS DSVAGRDGEL IVFDARAVLP CFLIFFRL

Best Arabidopsis Sequence Match ( AT4G12450.1 )
(BLAST)

001: MPIGWVKSLH CKSKAFDDVY HHHSNKGKLL LPSYSCRKNV RDVVNTQPGT VKKNPKPDPS LRRLCSSRRP ELDSNSHHPT RRSVSARASS ESVLPVLTDL
101: PDGHPSRNVV EIIFQSSWSS DEFPGRVEMI FKVENGSKAV TRFEEYREAV KSRSCSKVDS DRVDGSACDE NARCSADGNE MMRFFPLGPI PGGINGGAWG
201: FPGGKGAAVC TFSGSGEAHA STGGGGGRRA MLICRVIAGR VAKKGEFGSD SVAGRAGELI VFDARAVLPC FLIFFRL

Arabidopsis Description

At4g12450 [Source:UniProtKB/TrEMBL;Acc:Q9SU37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.