CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRG97711
KRG99083
KRH14933
KRH16959
KRH24006
KRH27646
KRH27971
KRH28419
KRH29310
KRH31163
KRH53667
KRH57983
KRH64261
KRH67075
KRH73205
KRH77058
KRH77487
KRH77849

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	KRG99083	AT1G05410.1	21798944
AT4G12450.1	KRH27646	AT1G05410.1	21798944
AT4G12450.1	KRH77849	AT1G05410.1	21798944
AT4G12450.1	KRG95394	AT2G19650.1	21798944
AT4G12450.1	KRH67075	AT2G19650.1	21798944
AT4G12450.1	KRH28419	AT2G23290.1	21798944
AT4G12450.1	KRH57983	AT2G23290.1	21798944
AT4G12450.1	KRH77058	AT2G23290.1	21798944
AT4G12450.1	KRG97711	AT3G08530.1	21798944
AT4G12450.1	KRH14933	AT3G08530.1	21798944
AT4G12450.1	KRH31163	AT3G08530.1	21798944
AT4G12450.1	KRH73205	AT3G08530.1	21798944
AT4G12450.1	KRH24006	AT3G48150.1	21798944
AT4G12450.1	KRH27971	AT3G48150.1	21798944
AT4G12450.1	KRH29310	AT3G48150.1	21798944
AT4G12450.1	KRH77487	AT3G48150.1	21798944
AT4G12450.1	KRH16959	AT3G49580.1	21798944
AT4G12450.1	KRH53667	AT3G49580.1	21798944
AT4G12450.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28045	Soybean	mitochondrion	92.25	91.93
Solyc08g079010.1.1	Tomato	cytosol	39.79	71.52
KRH57359	Soybean	cytosol	70.77	70.28
KRH04088	Soybean	cytosol	70.42	68.73
VIT_02s0154g00220.t01	Wine grape	cytosol	65.85	65.38
PGSC0003DMT400012224	Potato	nucleus	62.32	59.2
AT1G62520.1	Thale cress	nucleus	54.93	55.71
CDY12954	Canola	nucleus	51.41	55.3
CDY19564	Canola	nucleus	51.41	55.3
Bra027038.1-P	Field mustard	cytosol, plastid	51.41	55.3
AT4G12450.1	Thale cress	cytosol	52.11	53.43
Bra029455.1-P	Field mustard	cytosol	51.76	52.88
CDY63658	Canola	cytosol	51.76	52.88
CDY16714	Canola	cytosol	51.76	52.88
CDY42181	Canola	cytosol	47.54	52.33
Bra020842.1-P	Field mustard	cytosol	47.18	51.94
CDX76365	Canola	cytosol	47.18	51.94
AT4G22560.1	Thale cress	cytosol, plastid	48.24	51.89
KRH37293	Soybean	plastid	27.82	51.3
Os10t0554001-01	Rice	cytosol	32.04	50.0
GSMUA_Achr5P15290_001	Banana	nucleus	42.96	48.03
GSMUA_Achr2P10020_001	Banana	cytosol	44.01	46.64
GSMUA_Achr4P27010_001	Banana	plastid	46.83	46.5
GSMUA_Achr7P07110_001	Banana	cytosol	44.72	46.01
GSMUA_Achr4P30380_001	Banana	cytosol	43.31	43.46
GSMUA_Achr1P01700_001	Banana	nucleus	44.37	42.71
TraesCS5A01G536800.1	Wheat	cytosol	28.87	42.71
TraesCS6A01G248100.1	Wheat	plastid	40.14	41.16
HORVU6Hr1G063400.2	Barley	plastid	40.49	40.93
TraesCS6B01G276600.1	Wheat	plastid	40.14	40.71
TraesCS6D01G230200.1	Wheat	plastid	39.79	40.36
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	41.9	40.34
Zm00001d017504_P001	Maize	mitochondrion	40.85	39.59
Os02t0661600-00	Rice	mitochondrion	39.79	36.93
KXG31078	Sorghum	plastid	40.85	36.71
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	37.32	36.68
Zm00001d047106_P001	Maize	plastid	38.03	36.49
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	36.97	35.84
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	36.97	35.84
Zm00001d029869_P001	Maize	mitochondrion	38.73	35.83
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	36.97	35.71
KXG38947	Sorghum	mitochondrion	38.38	34.06
KRH25897	Soybean	cytosol	20.42	32.58
TraesCS4D01G361200.1	Wheat	plastid	35.21	32.47
TraesCS4B01G369900.1	Wheat	plastid	35.56	32.27
KRH17425	Soybean	nucleus	35.56	24.4
KRH05942	Soybean	nucleus	35.56	24.22
KRG98330	Soybean	endoplasmic reticulum, golgi	30.28	22.51
KRH73867	Soybean	cytosol	11.62	21.85
KRH27121	Soybean	cytosol, plastid	33.45	21.79
KRH55605	Soybean	cytosol	33.8	21.77
KRH22216	Soybean	cytosol, plastid	33.45	21.64
KRH14275	Soybean	cytosol	20.07	21.35
KRH64726	Soybean	nucleus	30.63	20.42
KRH10693	Soybean	nucleus	28.17	20.1
KRH53192	Soybean	nucleus	29.58	19.86
KRH21644	Soybean	nucleus	27.46	19.55
KRH58632	Soybean	nucleus	21.83	17.13

Protein Annotations

EMBL:ACUP02000669	EnsemblPlants:KRH77393	EnsemblPlantsGene:GLYMA_01G210700	EntrezGene:100820460	Gene3D:3.90.228.10	PANTHER:PTHR31681
PANTHER:PTHR31681:SF12	ProteinID:KRH77393	ProteinID:KRH77393.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002337404
UniProt:I1J9X2	MapMan:15.5.15	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:54226298..54227426

Molecular Weight (calculated)

30934.9 Da

IEP (calculated)

9.924

GRAVY (calculated)

-0.438

Length

284 amino acids

Sequence
(BLAST)

001: MASGWVKSLQ CKSRAYQDVY HPSSSCRNTV QNIRDVVVDT TKPRPRPKTK PKSKPLQKHP SSRYPSSAAK PDFETTINRS MSVTATATRH ADPRFPSLTE
101: LTEGHPSRNV VEIIFHTSWG PKPFSGLVEM IFKVHNGPRT VSRFEEFREA VKGRAETGPA HDYEENARCR ADGNEVMRFH CLGPTSGGAP YGGACALSFP
201: GGKEAAICTF SGSGGAHESS GGGRGRRAML VCRVIAGRVS KQIGFMESLL DGRVGFDSVS GDKGELLVFD SRAVLPCFLI IYKL

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.