CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53192	Soybean	nucleus	94.6	95.27
PGSC0003DMT400074652	Potato	plastid	50.0	66.15
GSMUA_Achr11P...	Banana	cytosol	41.55	65.56
GSMUA_Achr6P17990_001	Banana	nucleus	38.73	64.2
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	50.7	64.09
GSMUA_Achr9P00350_001	Banana	nucleus	42.02	62.81
Solyc11g013220.1.1	Tomato	nucleus	57.51	60.79
VIT_18s0001g03670.t01	Wine grape	nucleus	69.25	60.33
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	46.71	60.12
GSMUA_Achr8P30300_001	Banana	nucleus	49.77	54.92
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	49.3	54.55
KRH25897	Soybean	cytosol	22.54	53.93
KRH17425	Soybean	nucleus	46.71	48.07
KRH05942	Soybean	nucleus	45.77	46.76
Os11t0169400-01	Rice	nucleus	43.19	43.29
TraesCS4D01G108700.1	Wheat	nucleus	43.9	42.79
TraesCS4A01G207500.1	Wheat	nucleus	43.43	42.63
TraesCS4B01G111000.1	Wheat	nucleus	43.66	42.56
HORVU4Hr1G019890.1	Barley	nucleus	42.02	41.63
KXG27839	Sorghum	nucleus, plastid	43.66	41.33
Zm00001d053006_P001	Maize	nucleus	41.08	41.27
KRG98330	Soybean	endoplasmic reticulum, golgi	32.16	35.86
Zm00001d004822_P001	Maize	nucleus, plastid	29.34	35.82
KRH55605	Soybean	cytosol	35.68	34.47
KRH22216	Soybean	cytosol, plastid	34.04	33.03
KRH27121	Soybean	cytosol, plastid	33.33	32.57
KRH73867	Soybean	cytosol	11.27	31.79
KRH10693	Soybean	nucleus	29.11	31.16
KRH04088	Soybean	cytosol	21.13	30.93
KRH77393	Soybean	mitochondrion	20.42	30.63
KRH28045	Soybean	mitochondrion	20.42	30.53
KRH21644	Soybean	nucleus	28.4	30.33
KRH57359	Soybean	cytosol	20.19	30.07
KRH58632	Soybean	nucleus	24.41	28.73
KRH37293	Soybean	plastid	9.86	27.27
KRH14275	Soybean	cytosol	16.43	26.22

Protein Annotations

EMBL:ACUP02002772	EnsemblPlants:KRH64726	EnsemblPlantsGene:GLYMA_04G252600	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21
ProteinID:KRH64726	ProteinID:KRH64726.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0001E248C0	UniProt:I1JZ96
MapMan:15.5.15	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:51925809..51927970

Molecular Weight (calculated)

46809.1 Da

IEP (calculated)

9.813

GRAVY (calculated)

-0.586

Length

426 amino acids

Sequence
(BLAST)

001: MSKPKTQRKP TITKHVSQNQ NQEAQKTEKQ PSWVVRGLLA CRNVQIQQNQ PQQKEAKSPP EAKENRKKQE HRKLQEERVP EENSKKSKKM KCSGSLCNNT
101: KITAKPDTAT PDVHKKRLLL SGCNNKNDAS SRSMKAPLNE LNGTVSASSS SLSASSTSSG GGSFRGMPFR RLSGCYECRM VVDPVLGFTR DPSLRSSICS
201: CPDCGEIMKA ESLEHHQAVK HAVSELGPED TSKNIVEIIF HSSWLKKQSP VCKIDRILKV HNTQKTITKF EEYRDSIKAK ATKLSKKHPR CIADGNELLR
301: FHCTSFNCSL GLNGSSNLCN SIPQCNVCSI IKHGFKVTGG AGILTTATSG KAHDKAACVE ESEEKRAMLV CRVIAGRVKK NAEGGMEEYD SVAVAGAVGA
401: YSNLDELLVF NPKAILPCFV VIYRGF

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.