Factsheet for Zm00001d004822_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27839	Sorghum	nucleus, plastid	73.93	57.33
Zm00001d053006_P001	Maize	nucleus	66.76	54.95
Os11t0169400-01	Rice	nucleus	56.45	46.35
TraesCS4B01G111000.1	Wheat	nucleus	52.15	41.65
TraesCS4A01G207500.1	Wheat	nucleus	51.58	41.47
TraesCS4D01G108700.1	Wheat	nucleus	51.58	41.19
HORVU4Hr1G019890.1	Barley	nucleus	48.71	39.53
GSMUA_Achr9P00350_001	Banana	nucleus	28.94	35.44
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	32.38	33.53
PGSC0003DMT400074652	Potato	plastid	30.66	33.23
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	34.67	31.43
Solyc11g013220.1.1	Tomato	nucleus	34.67	30.02
Zm00001d026684_P001	Maize	nucleus	35.53	29.59
KRH64726	Soybean	nucleus	35.82	29.34
KRH53192	Soybean	nucleus	34.96	28.84
VIT_18s0001g03670.t01	Wine grape	nucleus	38.68	27.61
Zm00001d004497_P001	Maize	nucleus, plastid	28.65	21.79
Zm00001d024883_P001	Maize	nucleus	29.23	19.92
Zm00001d012605_P001	Maize	nucleus	27.79	19.36
Zm00001d043243_P001	Maize	nucleus	27.51	19.01
Zm00001d014485_P001	Maize	nucleus, plastid	21.2	16.89
Zm00001d017504_P001	Maize	mitochondrion	13.47	16.04
Zm00001d047106_P001	Maize	plastid	13.47	15.88
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	20.63	15.58
Zm00001d029869_P001	Maize	mitochondrion	13.47	15.31

Protein Annotations

EnsemblPlants:Zm00001d004822_P001	EnsemblPlants:Zm00001d004822_T001	EnsemblPlantsGene:Zm00001d004822	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21	PFscan:PS50157	ProteinID:ONM19642.1
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI000842A860	UniProt:A0A1D6EHP0	MapMan:15.5.15

Description

C2H2-like zinc finger protein

Coordinates

chr2:-:141288749..141289952

Molecular Weight (calculated)

37519.1 Da

IEP (calculated)

10.424

GRAVY (calculated)

-0.515

Length

349 amino acids

Sequence
(BLAST)

001: MPFPPVAVKE MSREARKTKS RSSPSPSSWL DRSMKFYYPS STSRKSRAQA APAAATEGKS TDGGDKPSNG SSGKKKKKKK RSISIGRSMA CGSSICSTST
101: KESSVMSRDS SSGASSRSLR SPNVDAVYAS AAAAISATSS FSSVTTTAAT TVTSSTSSSS PLSSALSSPL SSIGRSFRGV QIRRLSGCYE CRHSVFDPSG
201: FAASFPCADC DEVFSKPESL ELHRATRHAV SELAPEDTSR NVVEIIFQSS WLRKQTPPVC RIERVLKVQS SDRTVKRFEQ YRESVRERAR SDDQGQGKKN
301: PRCVADGNEL LRFHCATFTC SLGLAGSTAL CRAPSAQCML CSIIKEGFR

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.