Factsheet for TraesCS4A01G207500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G108700.1	Wheat	nucleus	94.01	93.36
TraesCS4B01G111000.1	Wheat	nucleus	93.55	92.91
HORVU4Hr1G019890.1	Barley	nucleus	90.09	90.93
Os11t0169400-01	Rice	nucleus	57.83	59.06
KXG27839	Sorghum	nucleus, plastid	59.45	57.33
Zm00001d053006_P001	Maize	nucleus	55.53	56.84
GSMUA_Achr9P00350_001	Banana	nucleus	35.25	53.68
TraesCS2A01G569700.1	Wheat	nucleus	31.8	52.67
Zm00001d004822_P001	Maize	nucleus, plastid	41.47	51.58
PGSC0003DMT400074652	Potato	plastid	36.18	48.76
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	40.09	45.19
KRH64726	Soybean	nucleus	42.63	43.43
KRH53192	Soybean	nucleus	41.71	42.79
Solyc11g013220.1.1	Tomato	nucleus	39.4	42.43
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	31.8	40.95
TraesCS2A01G004600.1	Wheat	nucleus	31.11	39.94
VIT_18s0001g03670.t01	Wine grape	nucleus	42.4	37.63
TraesCS5A01G536800.1	Wheat	cytosol	15.9	35.94
TraesCS6A01G248100.1	Wheat	plastid	17.97	28.16
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	18.43	27.3
TraesCS3A01G324600.1	Wheat	nucleus	29.03	24.85
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	24.65	24.77

Protein Annotations

EnsemblPlants:TraesCS4A01G207500.1	EnsemblPlantsGene:TraesCS4A01G207500	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF56399	MapMan:15.5.15	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:500658557..500660041

Molecular Weight (calculated)

45776.2 Da

IEP (calculated)

9.095

GRAVY (calculated)

-0.240

Length

434 amino acids

Sequence
(BLAST)

001: MDATAAGKKM GIGGEKKQQR KPGSSFWGAM ALKSRSQPGG AGESKNIKSE RKTTTTTTKR SVSIGRSMTC PGSICGTKES AVLSRESCRN SHSGRNVSSS
101: SRSLKAPDND ILSVPVVASG AVVSASSSFN SETSVATTAT TVSSSSSSSS ALSSPLSSIV AGSRSFRKLS GCYYECHSAL DPRTSLVGGA GMLPCSDCDE
201: FFVKAESLEL HRATRHAVSE LGAEDTSRNV VEIIFQSSWL VGKPRAAPIC RIERILKVYS SGRTVERFEQ YRERVKAIAA SSTDELARRS FPRCAADGNE
301: ILRFHCTTFT CSLGLAGATS LCRSSPQQCK LCSIIRDGFR VDGDGKIATM ATSGRAHDKA QTPLPGGGGG EKRAMLVCRV VAGRVKKLVN SSNSSEESGC
401: DSVSSCSDLD ELSVFNPLAI LPCFVVMYAV ATET

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.