Factsheet for TraesCS2A01G004600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G012300.1	Wheat	nucleus, plastid	94.67	65.98
TraesCS2D01G004200.1	Wheat	nucleus, plastid	95.56	65.78
GSMUA_Achr11P...	Banana	nucleus	50.0	65.0
TraesCS2A01G569700.1	Wheat	nucleus	41.72	53.82
Os04t0115500-00	Rice	nucleus	74.56	52.5
PGSC0003DMT400025521	Potato	plastid	47.93	51.59
Zm00001d004497_P001	Maize	nucleus, plastid	68.34	50.33
Zm00001d024883_P001	Maize	nucleus	72.19	47.66
EES10376	Sorghum	nucleus	72.49	45.2
GSMUA_Achr8P19240_001	Banana	nucleus	54.73	43.84
VIT_18s0001g14130.t01	Wine grape	vacuole	51.48	41.53
KRH17425	Soybean	nucleus	50.59	41.3
KRH05942	Soybean	nucleus	50.89	41.25
GSMUA_Achr11P...	Banana	nucleus	55.62	40.96
CDX73189	Canola	nucleus	50.89	40.09
CDY47503	Canola	nucleus	51.18	39.68
CDY39052	Canola	nucleus	52.07	39.46
CDY13543	Canola	nucleus	50.0	39.12
Bra008218.1-P	Field mustard	nucleus	51.18	38.79
AT1G75710.1	Thale cress	nucleus	52.96	38.74
Bra014094.1-P	Field mustard	plastid	47.63	38.52
CDY20903	Canola	nucleus, plastid	47.63	38.42
Bra015824.1-P	Field mustard	nucleus	52.07	38.01
CDY06723	Canola	nucleus, plastid	47.04	37.95
Bra015598.1-P	Field mustard	plastid	47.04	37.95
TraesCS5A01G536800.1	Wheat	cytosol	21.3	37.5
Solyc04g081370.2.1	Tomato	extracellular, vacuole	49.7	37.25
CDY16999	Canola	nucleus, plastid	42.01	34.3
CDY17799	Canola	nucleus, plastid	43.79	34.1
TraesCS4A01G207500.1	Wheat	nucleus	39.94	31.11
PGSC0003DMT400076665	Potato	cytosol	13.31	28.3
TraesCS6A01G248100.1	Wheat	plastid	22.78	27.8
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	33.43	26.16
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	21.89	25.26
TraesCS3A01G324600.1	Wheat	nucleus	36.98	24.65

Protein Annotations

EnsemblPlants:TraesCS2A01G004600.1	EnsemblPlantsGene:TraesCS2A01G004600	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF20	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF56399	MapMan:15.5.15	:	:	:

Description

No Description!

Coordinates

chr2A:-:2463426..2466243

Molecular Weight (calculated)

35556.6 Da

IEP (calculated)

7.218

GRAVY (calculated)

-0.273

Length

338 amino acids

Sequence
(BLAST)

001: MRDVATVDGA SSAASVVVDH RDTAPLNRSS RRAHHSSSSS AGGGGHPSSL RGLSGCYECR AINVEPVSRR YPRPRELCPC SQCGEVFTKA DSLEQHQAVR
101: HAVSELGPED SGRNIVEIIF KSSWQKRDRP ICHIDRILKV RNPARTVARF EAYRDAVRAR CRADVSAGGA TRAAADGNEL LRFHPAALAC ELGADGSTSL
201: CASCADGDVD GKTAAAACGV CAAIRHGFAP WAGAHPLGVR TTASSGRAHD VCGAEGPSAG AGAGWRAMLV CRVIAGQVRR RDGDGEEKEE EGQAVPFDSV
301: AGDDAGGAYG VLEELFVANP RAILPCFVVV YRVDVDPQ

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.