Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G004600.1 | Wheat | nucleus | 52.5 | 74.56 |
| TraesCSU01G012300.1 | Wheat | nucleus, plastid | 70.0 | 69.28 |
| TraesCS2D01G004200.1 | Wheat | nucleus, plastid | 69.58 | 68.02 |
| Zm00001d024883_P001 | Maize | nucleus | 72.29 | 67.77 |
| Zm00001d004497_P001 | Maize | nucleus, plastid | 63.96 | 66.88 |
| GSMUA_Achr11P... | Banana | nucleus | 35.21 | 65.0 |
| EES10376 | Sorghum | nucleus | 73.12 | 64.76 |
| GSMUA_Achr8P19240_001 | Banana | nucleus | 50.0 | 56.87 |
| GSMUA_Achr11P... | Banana | nucleus | 51.25 | 53.59 |
| PGSC0003DMT400025521 | Potato | plastid | 34.17 | 52.23 |
| CDX73189 | Canola | nucleus | 44.38 | 49.65 |
| KRH17425 | Soybean | nucleus | 42.29 | 49.03 |
| CDY47503 | Canola | nucleus | 44.38 | 48.85 |
| KRH05942 | Soybean | nucleus | 42.08 | 48.44 |
| VIT_18s0001g14130.t01 | Wine grape | vacuole | 41.88 | 47.97 |
| CDY13543 | Canola | nucleus | 42.71 | 47.45 |
| Bra014094.1-P | Field mustard | plastid | 40.83 | 46.89 |
| CDY39052 | Canola | nucleus | 43.54 | 46.86 |
| Bra015824.1-P | Field mustard | nucleus | 45.0 | 46.65 |
| AT1G75710.1 | Thale cress | nucleus | 44.79 | 46.54 |
| CDY20903 | Canola | nucleus, plastid | 40.42 | 46.3 |
| Bra008218.1-P | Field mustard | nucleus | 42.92 | 46.19 |
| CDY06723 | Canola | nucleus, plastid | 39.79 | 45.58 |
| Bra015598.1-P | Field mustard | plastid | 39.58 | 45.35 |
| Solyc04g081370.2.1 | Tomato | extracellular, vacuole | 42.5 | 45.23 |
| Os10t0554001-01 | Rice | cytosol | 16.25 | 42.86 |
| CDY16999 | Canola | nucleus, plastid | 36.46 | 42.27 |
| CDY17799 | Canola | nucleus, plastid | 37.92 | 41.94 |
| Os04t0690100-01 | Rice | nucleus | 37.08 | 35.74 |
| Os11t0169400-01 | Rice | nucleus | 29.79 | 33.65 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 30.21 | 29.9 |
| Os02t0661600-00 | Rice | mitochondrion | 18.12 | 28.43 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 27.29 | 28.17 |
| PGSC0003DMT400076665 | Potato | cytosol | 8.96 | 27.04 |
| Os03t0264600-00 | Rice | endoplasmic reticulum, nucleus | 23.54 | 24.25 |
Protein Annotations
| EnsemblPlants:Os04t0115500-00 | EnsemblPlantsGene:Os04g0115500 | EntrezGene:4334944 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF20 | PFscan:PS50157 |
| ProteinID:BAF13956.1 | ProteinID:BAS87601.1 | ProteinID:EEE60400.1 | RefSeq:XP_015634299.1 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF56399 | UniParc:UPI0000DD8F13 | UniProt:Q0JFD1 | MapMan:15.5.15 | : | : |
Description
Zinc finger, C2H2-type domain containing protein. (Os04t0115500-00)
Coordinates
chr4:+:913931..917426
Molecular Weight (calculated)
50187.0 Da
IEP (calculated)
9.763
GRAVY (calculated)
-0.369
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSTLLLPS SSSSSSKTAT ATDTSDRRRH HHHHNHTKRK KKPPPPPLSP TPRTPPPAGS GSHRAMAASS KKSTKQVVVA AKTTTGHRPK KAAAAPTTPS
101: RGAPSASAAP VSSSWEQLKS LLSCRSATAA ARVHDPAAPS SALSRLRSHG AGACGASLCA IRDVVDAASS ASAASTAAAS LDRDTTPLTR SSRRAHRAAT
201: SSSGGGGGHH ASLRGLSGCY ECRAINVEPM SRRYPRPREL CACSQCGEVF NKADSLEHHQ AIRHAVSELG PEDSGRNIVE IIFKSSWQKR DRPICQIDRI
301: LKVHNAARTV ARFEAYRDAV RTRCRATAAR AAADGNELLR FHPAALACPL GLNGATSLCD DDDACGVCAA IRHGFAPWAG AHPLGVRTTA SSGRAHDCGA
401: AAAAAQQAGG CRAMLVCRVI AGRVRRNDDD GGAEEEEGAF DSVAGDEAAS SVYGNLEELF VANPRAILPC FVVIYRVVPE
101: RGAPSASAAP VSSSWEQLKS LLSCRSATAA ARVHDPAAPS SALSRLRSHG AGACGASLCA IRDVVDAASS ASAASTAAAS LDRDTTPLTR SSRRAHRAAT
201: SSSGGGGGHH ASLRGLSGCY ECRAINVEPM SRRYPRPREL CACSQCGEVF NKADSLEHHQ AIRHAVSELG PEDSGRNIVE IIFKSSWQKR DRPICQIDRI
301: LKVHNAARTV ARFEAYRDAV RTRCRATAAR AAADGNELLR FHPAALACPL GLNGATSLCD DDDACGVCAA IRHGFAPWAG AHPLGVRTTA SSGRAHDCGA
401: AAAAAQQAGG CRAMLVCRVI AGRVRRNDDD GGAEEEEGAF DSVAGDEAAS SVYGNLEELF VANPRAILPC FVVIYRVVPE
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.