Factsheet for Bra008218.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39052	Canola	nucleus	97.98	97.98
CDY13543	Canola	nucleus	93.72	96.76
Bra015824.1-P	Field mustard	nucleus	88.79	85.53
AT1G75710.1	Thale cress	nucleus	87.22	84.2
VIT_18s0001g14130.t01	Wine grape	vacuole	63.9	68.02
KRH17425	Soybean	nucleus	62.78	67.63
KRH05942	Soybean	nucleus	63.0	67.39
Bra014094.1-P	Field mustard	plastid	58.97	62.92
Bra015598.1-P	Field mustard	plastid	58.3	62.05
GSMUA_Achr11P...	Banana	nucleus	36.1	61.92
TraesCS2A01G004600.1	Wheat	nucleus	38.79	51.18
GSMUA_Achr8P19240_001	Banana	nucleus	43.27	45.73
GSMUA_Achr11P...	Banana	nucleus	45.52	44.23
Os04t0115500-00	Rice	nucleus	46.19	42.92
TraesCSU01G012300.1	Wheat	nucleus, plastid	45.52	41.86
Zm00001d004497_P001	Maize	nucleus, plastid	42.6	41.39
TraesCS2D01G004200.1	Wheat	nucleus, plastid	45.52	41.34
Zm00001d024883_P001	Maize	nucleus	45.07	39.26
EES10376	Sorghum	nucleus	46.41	38.19
Bra026366.1-P	Field mustard	nucleus	34.53	36.15
Bra020842.1-P	Field mustard	cytosol	20.18	34.88
Bra022735.1-P	Field mustard	nucleus	34.75	32.77
Bra019849.1-P	Field mustard	cytosol, mitochondrion	25.78	32.12
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	26.46	31.72
Bra029455.1-P	Field mustard	cytosol	19.73	31.65
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	26.68	31.57
Bra027038.1-P	Field mustard	cytosol, plastid	18.16	30.68

Protein Annotations

EnsemblPlants:Bra008218.1	EnsemblPlants:Bra008218.1-P	EnsemblPlantsGene:Bra008218	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF22	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002545D34	UniProt:M4CVH1	MapMan:15.5.15

Description

AT1G75710 (E=8e-182) | zinc finger (C2H2 type) family protein

Coordinates

chrA02:+:13881091..13883210

Molecular Weight (calculated)

48507.4 Da

IEP (calculated)

9.637

GRAVY (calculated)

-0.505

Length

446 amino acids

Sequence
(BLAST)

001: MALLTFLPEN AVSPNHTPPP NKRKNREINH TNQTQKPHKP QKQKAVAPQK QPSSWDQIKN LLTCKQIEGS RIHDPSKNSQ PGPSTTTHLL SPSKLGSSCS
101: SICRFRDVAH GNTRVVDRAD HSPDVANSAT PDSETRLLTR KPGQHGSSSS SRSLRYGSTT SSATTSFRAM QFRKLSGCYE CHMIVDPSKY PISPRVRACS
201: QCGEVFPKLE SLELHQAVRH AVSELGPEDS GRNIVEIIFK SSWLKKDSPI CKIERILKVQ NTQSTIQRFE DCRDAVKARA LQTTRKDARC AADGNELLRF
301: HCTTLTCSLG SRGSSSLCSN LPNCGVCNVI RHGFQGKSGT GGANAGVRTT SSSGRADDLL RCSDDARRVM LVCRVIAGSV KRVDSTAAEK KSPVEDNSTV
401: GVSSTGGVFD SVAVNAGAYS NLEELVVYNP RAILPCFVVI YKVVES

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.