Factsheet for TraesCSU01G012300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G004200.1	Wheat	nucleus, plastid	96.49	95.32
TraesCS2A01G004600.1	Wheat	nucleus	65.98	94.67
Os04t0115500-00	Rice	nucleus	69.28	70.0
Zm00001d004497_P001	Maize	nucleus, plastid	62.06	65.58
GSMUA_Achr11P...	Banana	nucleus	34.64	64.62
Zm00001d024883_P001	Maize	nucleus	64.74	61.33
EES10376	Sorghum	nucleus	66.8	59.78
GSMUA_Achr8P19240_001	Banana	nucleus	47.01	54.03
PGSC0003DMT400025521	Potato	plastid	33.4	51.59
GSMUA_Achr11P...	Banana	nucleus	47.63	50.33
KRH17425	Soybean	nucleus	41.24	48.31
CDX73189	Canola	nucleus	42.68	48.25
KRH05942	Soybean	nucleus	41.24	47.96
CDY47503	Canola	nucleus	43.09	47.94
VIT_18s0001g14130.t01	Wine grape	vacuole	41.03	47.49
CDY13543	Canola	nucleus	41.44	46.53
CDY39052	Canola	nucleus	42.47	46.19
AT1G75710.1	Thale cress	nucleus	43.51	45.67
Bra015824.1-P	Field mustard	nucleus	43.51	45.57
Bra008218.1-P	Field mustard	nucleus	41.86	45.52
Solyc04g081370.2.1	Tomato	extracellular, vacuole	41.24	44.35
Bra014094.1-P	Field mustard	plastid	37.94	44.02
CDY20903	Canola	nucleus, plastid	37.73	43.68
CDY06723	Canola	nucleus, plastid	37.32	43.2
Bra015598.1-P	Field mustard	plastid	37.32	43.2
CDY16999	Canola	nucleus, plastid	34.02	39.86
CDY17799	Canola	nucleus, plastid	35.26	39.4
PGSC0003DMT400076665	Potato	cytosol	9.28	28.3

Protein Annotations

EnsemblPlants:TraesCSU01G012300.1	EnsemblPlantsGene:TraesCSU01G012300	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF20	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF56399	MapMan:15.5.15	:	:	:

Description

No Description!

Coordinates

chrUn:-:15885098..15888448

Molecular Weight (calculated)

50912.9 Da

IEP (calculated)

9.579

GRAVY (calculated)

-0.425

Length

485 amino acids

Sequence
(BLAST)

001: MALSTLLLPS SSTAADTSDR RRGQQPQNHH SKRKKKPPAL PPPLSPAPRT PGRRHLAATG TPSRKSPALA APTAGAKARL VASKDHRQRR SGSKKAAAQK
101: PARPASSWEQ LKSLLSCRSA TAAARVHDPA ALARGPGAGG YWGTSLCSMR DVATVDGASS AASVVVDHRD TAPLNRSSRR AHHSSSSAAG GGGHPSSLRG
201: LSGCYECRAI NVEPVSRRYP RPRELCPCSQ CGEVFTKADS LEQHQAVRHA VSELGPEDSG RNIVEIIFKS SWQKRDRPIC HIDRILKVRN PPRTVARFEA
301: YRDAVRARCR ADVSAGGGGA TRAAADGNEL LRFHPAALAC ELGADGSTSL CASCDDGDAD GKTAAAACGV CAAIRHGFAP WAGAHPLGVR TTASSGRAHD
401: VCGAEAVGAP GWRAMLVCRV IAGQVRRRDG DEDGEEKEVE AGPFDSVAGD DAGGAYGVLE ELFVANPRAI LPCFVVVYRV DVDAQ

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.