Factsheet for GSMUA_Achr11P16550_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025521	Potato	plastid	64.23	53.18
GSMUA_Achr6P17990_001	Banana	nucleus	51.54	52.14
GSMUA_Achr11P...	Banana	cytosol	52.31	50.37
TraesCS2A01G004600.1	Wheat	nucleus	65.0	50.0
GSMUA_Achr8P19240_001	Banana	nucleus	79.62	49.05
GSMUA_Achr9P00350_001	Banana	nucleus	52.69	48.07
GSMUA_Achr11P...	Banana	nucleus	80.77	45.75
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	53.46	41.99
KRH17425	Soybean	nucleus	66.15	41.55
VIT_18s0001g14130.t01	Wine grape	vacuole	65.38	40.57
KRH05942	Soybean	nucleus	65.0	40.53
GSMUA_Achr6P19070_001	Banana	cytosol	20.38	40.15
CDX73189	Canola	nucleus	63.85	38.69
Bra014094.1-P	Field mustard	plastid	61.92	38.52
CDY20903	Canola	nucleus, plastid	61.92	38.42
CDY06723	Canola	nucleus, plastid	61.54	38.19
Bra015598.1-P	Field mustard	plastid	61.54	38.19
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	55.77	37.66
CDY47503	Canola	nucleus	62.69	37.39
GSMUA_Achr8P30300_001	Banana	nucleus	55.38	37.31
Solyc04g081370.2.1	Tomato	extracellular, vacuole	63.85	36.81
Zm00001d004497_P001	Maize	nucleus, plastid	64.23	36.38
AT1G75710.1	Thale cress	nucleus	64.23	36.15
CDY13543	Canola	nucleus	60.0	36.11
CDY39052	Canola	nucleus	61.92	36.1
Bra008218.1-P	Field mustard	nucleus	61.92	36.1
GSMUA_Achr7P19590_001	Banana	cytosol	11.92	36.05
Bra015824.1-P	Field mustard	nucleus	63.08	35.42
Os04t0115500-00	Rice	nucleus	65.0	35.21
TraesCSU01G012300.1	Wheat	nucleus, plastid	64.62	34.64
TraesCS2D01G004200.1	Wheat	nucleus, plastid	65.0	34.42
CDY16999	Canola	nucleus, plastid	54.23	34.06
CDY17799	Canola	nucleus, plastid	56.54	33.87
Zm00001d024883_P001	Maize	nucleus	65.38	33.2
GSMUA_Achr5P15290_001	Banana	nucleus	31.54	32.28
EES10376	Sorghum	nucleus	64.62	31.0
GSMUA_Achr6P24320_001	Banana	cytosol	38.85	29.97
PGSC0003DMT400076665	Potato	cytosol	18.08	29.56
GSMUA_Achr7P07110_001	Banana	cytosol	31.15	29.35
GSMUA_Achr2P10020_001	Banana	cytosol	30.0	29.1
GSMUA_Achr4P27010_001	Banana	plastid	31.15	28.32
GSMUA_Achr4P30380_001	Banana	cytosol	30.77	28.27
GSMUA_AchrUn_...	Banana	cytosol	37.69	27.22
GSMUA_Achr1P01700_001	Banana	nucleus	30.77	27.12
GSMUA_Achr1P08590_001	Banana	nucleus	43.46	27.1
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	38.46	26.95
GSMUA_Achr9P29950_001	Banana	cytosol	38.85	26.93
GSMUA_Achr9P24720_001	Banana	cytosol	36.15	26.04
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	29.23	25.76
GSMUA_Achr6P19060_001	Banana	nucleus	12.69	14.6

Protein Annotations

EnsemblPlants:GSMUA_Achr11P16550_001	EnsemblPlants:GSMUA_Achr11T16550_001	EnsemblPlantsGene:GSMUA_Achr11G16550_001	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF20	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI000295B50F	UniProt:M0RST5	MapMan:15.5.15

Description

ZOS4-01 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G16550_001]

Coordinates

chr11:+:18261622..18262923

Molecular Weight (calculated)

28237.5 Da

IEP (calculated)

7.585

GRAVY (calculated)

-0.271

Length

260 amino acids

Sequence
(BLAST)

001: MQLPKLAGCY ECHAVSIDPS SRRYPRPRTT LCSCSECGEV FTKPETLELH QAVRHAVSEL GTEDSACNVV EIIFKSSWQK KDRPICKIER ILKVHNAPSA
101: VAPFEDYRAA VKFRRRHHPS RCAADGNELL RFHCTSLACA LGARGSTSLC SGSSSSAPCS VCTIIRHGFG GAHHPRGVRT TASSGRAHDA SGGGERRAML
201: VCRVIAGRVR RPCDEEEDED EDAYDSVAVG DSGGNLEELL VANPTAILPC FVVIYRALLD

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.