CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06723	Canola	nucleus, plastid	98.81	98.81
CDY16999	Canola	nucleus, plastid	82.34	83.33
CDY17799	Canola	nucleus, plastid	84.96	82.03
PGSC0003DMT400025521	Potato	plastid	47.26	63.06
GSMUA_Achr11P...	Banana	nucleus	38.42	61.92
CDX73189	Canola	nucleus	62.05	60.61
CDY47503	Canola	nucleus	63.01	60.55
CDY13543	Canola	nucleus	62.05	60.19
CDY39052	Canola	nucleus	63.25	59.42
Solyc04g081370.2.1	Tomato	extracellular, vacuole	60.14	55.88
TraesCS2A01G004600.1	Wheat	nucleus	38.42	47.63
GSMUA_Achr8P19240_001	Banana	nucleus	45.82	45.5
GSMUA_Achr11P...	Banana	nucleus	46.78	42.7
Os04t0115500-00	Rice	nucleus	46.3	40.42
Zm00001d004497_P001	Maize	nucleus, plastid	43.44	39.65
TraesCSU01G012300.1	Wheat	nucleus, plastid	43.68	37.73
Zm00001d024883_P001	Maize	nucleus	45.35	37.11
TraesCS2D01G004200.1	Wheat	nucleus, plastid	43.44	37.07
CDY29286	Canola	nucleus	35.56	36.25
EES10376	Sorghum	nucleus	46.3	35.79
CDY42181	Canola	cytosol	21.48	34.88
CDX89265	Canola	nucleus	35.32	34.66
CDX76365	Canola	cytosol	21.0	34.11
CDY06635	Canola	nucleus	35.32	33.64
CDY28761	Canola	nucleus	35.56	33.33
CDX97869	Canola	golgi	29.12	33.15
CDY51355	Canola	golgi	28.16	31.81
CDY18344	Canola	nucleus	34.37	31.79
CDY02000	Canola	golgi	28.4	31.65
CDX97964	Canola	cytosol	26.97	31.48
CDY12954	Canola	nucleus	19.81	31.44
CDY63658	Canola	cytosol	20.76	31.3
CDY16714	Canola	cytosol	20.76	31.3
CDY19564	Canola	nucleus	19.57	31.06
CDY49785	Canola	cytosol	26.49	31.01
CDY45464	Canola	golgi	28.4	25.65

Protein Annotations

EnsemblPlants:CDY20903	EnsemblPlantsGene:GSBRNA2T00013253001	Gene3D:3.90.228.10	GO:A0A078G8C2	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF22	PFscan:PS50157
ProteinID:CDY20903	ProteinID:CDY20903.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0004EE157C
UniProt:A0A078G8C2	MapMan:15.5.15	:	:	:	:

Description

BnaC06g01230DBnaC06g01230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8C2]

Coordinates

chrLK032114:-:190334..201618

Molecular Weight (calculated)

45879.7 Da

IEP (calculated)

9.934

GRAVY (calculated)

-0.489

Length

419 amino acids

Sequence
(BLAST)

001: MAPLPFLPAQ TKSQTRLSSD SKKKNGNKKT STQPPQTQTL KQTQKLKQKT VSSSSSSSWS QIKNLLSCKQ IEGPRVHDPS KITLSSCGSS LCKFSDVIYG
101: NARVIHRSDH SPESSNLGQD GGLLIRKPAT RGSSSTVRSN GCGAYTSSSK AMHFRKLSGC YECHMIVDPS RYPISPRIFA CPQCGEVFPK LETLEIHQAV
201: RHAVSELGPE DSGRNIVDII FKSSWLRKDG PLYKIERILK VHNTQRTIQR FEDCRDAVKS HAHASTRKEP RSAADGNELL RFHCTTVSCS LGSRGSTSLC
301: SNIPGCRVCT IIRHGFHAKT LRLGSGSNEI KGVRTTASSG RAHDALRCFD QRRAMLVCRV IAGRVRRGQS DAPEDENDSC SYDSVAGAAG VYTNLDDLAV
401: LNPKAILPCF VVIYKVSEP

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.