Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025521 | Potato | plastid | 63.86 | 91.72 |
| VIT_18s0001g14130.t01 | Wine grape | vacuole | 70.07 | 75.42 |
| KRH17425 | Soybean | nucleus | 64.3 | 70.05 |
| KRH05942 | Soybean | nucleus | 63.86 | 69.06 |
| GSMUA_Achr11P... | Banana | nucleus | 36.81 | 63.85 |
| AT1G75710.1 | Thale cress | nucleus | 63.86 | 62.34 |
| CDY20903 | Canola | nucleus, plastid | 55.88 | 60.14 |
| Bra014094.1-P | Field mustard | plastid | 55.65 | 60.05 |
| Bra015598.1-P | Field mustard | plastid | 55.65 | 59.9 |
| CDY06723 | Canola | nucleus, plastid | 55.43 | 59.67 |
| CDY16999 | Canola | nucleus, plastid | 51.22 | 55.8 |
| CDY17799 | Canola | nucleus, plastid | 52.99 | 55.07 |
| TraesCS2A01G004600.1 | Wheat | nucleus | 37.25 | 49.7 |
| GSMUA_Achr8P19240_001 | Banana | nucleus | 44.57 | 47.63 |
| Solyc11g013220.1.1 | Tomato | nucleus | 41.91 | 46.9 |
| GSMUA_Achr11P... | Banana | nucleus | 46.56 | 45.75 |
| Os04t0115500-00 | Rice | nucleus | 45.23 | 42.5 |
| Zm00001d004497_P001 | Maize | nucleus, plastid | 42.57 | 41.83 |
| TraesCSU01G012300.1 | Wheat | nucleus, plastid | 44.35 | 41.24 |
| Solyc08g079010.1.1 | Tomato | cytosol | 14.19 | 40.51 |
| TraesCS2D01G004200.1 | Wheat | nucleus, plastid | 43.9 | 40.33 |
| Zm00001d024883_P001 | Maize | nucleus | 44.35 | 39.06 |
| EES10376 | Sorghum | nucleus | 45.9 | 38.19 |
| Solyc07g063970.2.1 | Tomato | cytosol, nucleus, peroxisome | 35.48 | 37.47 |
| Solyc06g076820.1.1 | Tomato | extracellular, vacuole | 29.49 | 35.0 |
| Solyc02g079920.2.1 | Tomato | cytosol | 31.93 | 34.2 |
Protein Annotations
| EnsemblPlants:Solyc04g081370.2.1 | EnsemblPlantsGene:Solyc04g081370.2 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF22 | PFscan:PS50157 | ScanProsite:PS00028 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF56399 | TMHMM:TMhelix | UniParc:UPI000276605E | UniProt:K4BVL6 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:65379539..65382935
Molecular Weight (calculated)
49017.3 Da
IEP (calculated)
9.731
GRAVY (calculated)
-0.442
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKRTSSTIA LFFSHFLALF LMALLTFLPE TSEKNQPSKR RKKQQKQNKE KQKQPSSWDQ FKNLLTCKQI ENSTVHDPAS KNPPPSAAAA APAGAYSKLS
101: SCSSICSFRD VVHGNTRVVH RADNSPESSS LGQETRLLSK NKTSHHDPSS SSSRSLARSN GNGSSTYTTS SRGMQFRKLS GCYECHMIVD PSRYPLPRST
201: ICACPDCGEV FPKIESLEHH QAVKHAVSEL GPEDSSRNIV EIIFKSSWLK KDNPICKIER ILKVHNTKRT IQRFEDCRDA VKIHAVATGK KNPRCAADGN
301: ELLRFYCTSL TCVLGARGSS SLCGSVPGCG VCTTIRHGFQ GNKTSGVRTT ASSGRAHDCL GSGMARRRAM IVCRVIAGRV KQNVGASPTK EEENCSGSGS
401: GSGSGLSATG STIYNSVAGH VGIYSNLEEL YVFNPRAILP CFVVIYEALE S
101: SCSSICSFRD VVHGNTRVVH RADNSPESSS LGQETRLLSK NKTSHHDPSS SSSRSLARSN GNGSSTYTTS SRGMQFRKLS GCYECHMIVD PSRYPLPRST
201: ICACPDCGEV FPKIESLEHH QAVKHAVSEL GPEDSSRNIV EIIFKSSWLK KDNPICKIER ILKVHNTKRT IQRFEDCRDA VKIHAVATGK KNPRCAADGN
301: ELLRFYCTSL TCVLGARGSS SLCGSVPGCG VCTTIRHGFQ GNKTSGVRTT ASSGRAHDCL GSGMARRRAM IVCRVIAGRV KQNVGASPTK EEENCSGSGS
401: GSGSGLSATG STIYNSVAGH VGIYSNLEEL YVFNPRAILP CFVVIYEALE S
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.