Factsheet for PGSC0003DMT400025521

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	53.18	64.23
Solyc04g081370.2.1	Tomato	extracellular, vacuole	91.72	63.86
VIT_18s0001g14130.t01	Wine grape	vacuole	71.34	53.46
PGSC0003DMT400074652	Potato	plastid	53.5	52.17
KRH17425	Soybean	nucleus	68.79	52.17
KRH05942	Soybean	nucleus	68.15	51.32
TraesCS2A01G004600.1	Wheat	nucleus	51.59	47.93
Bra014094.1-P	Field mustard	plastid	63.38	47.61
CDY20903	Canola	nucleus, plastid	63.06	47.26
Bra015598.1-P	Field mustard	plastid	62.74	47.02
CDY06723	Canola	nucleus, plastid	62.42	46.78
AT1G75710.1	Thale cress	nucleus	67.83	46.1
CDY16999	Canola	nucleus, plastid	57.01	43.24
CDY17799	Canola	nucleus, plastid	59.24	42.86
GSMUA_Achr8P19240_001	Banana	nucleus	54.46	40.52
GSMUA_Achr11P...	Banana	nucleus	56.69	38.78
Os04t0115500-00	Rice	nucleus	52.23	34.17
Zm00001d004497_P001	Maize	nucleus, plastid	49.68	33.99
TraesCSU01G012300.1	Wheat	nucleus, plastid	51.59	33.4
TraesCS2D01G004200.1	Wheat	nucleus, plastid	51.59	32.99
Zm00001d024883_P001	Maize	nucleus	51.91	31.84
PGSC0003DMT400078031	Potato	extracellular, vacuole	37.26	31.45
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	42.36	30.93
EES10376	Sorghum	nucleus	52.87	30.63
PGSC0003DMT400076665	Potato	cytosol	15.29	30.19
PGSC0003DMT400055929	Potato	cytosol	39.49	29.74
PGSC0003DMT400012224	Potato	nucleus	25.8	27.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400025521	EnsemblPlantsGene:PGSC0003DMG400009859	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21	PFscan:PS50157	PGSC:PGSC0003DMG400009859
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002949A30	UniProt:M1ALJ4	MapMan:15.5.15

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009859]

Coordinates

chr4:+:70767673..70770618

Molecular Weight (calculated)

33563.7 Da

IEP (calculated)

8.534

GRAVY (calculated)

-0.309

Length

314 amino acids

Sequence
(BLAST)

001: SSSSSRSLAR SNGGGSSTCT TSSRGMQFRK LSGCYECHMI VDPSRYPLPR STICACPECG EVFPKIESLE HHQAVKHAVS ELGPEDSSRN IVEIIFKSSW
101: LKKDNPICKI ERILKVHNTK RTIQRFEDCR DAVKIHAVAT GKKNPRCAAD GNELLRFYCT SLTCTLGARD SSSLCGSVPG CGVCTTIRHG FQGNKTNGVR
201: TTASSGRAHD CLGSGMARRR AMIVCRVIAG RVKQTAKDVR ASPTTEEENC SGSGSGSGSG SGSGSGSSLS ATDSIVYDSV SGHAGIYSNL EELYVFNPRA
301: ILPCFVVIYE ALES

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.