Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47503 | Canola | nucleus | 84.42 | 89.45 |
| CDX73189 | Canola | nucleus | 82.03 | 88.34 |
| CDY13543 | Canola | nucleus | 82.47 | 88.19 |
| Bra015824.1-P | Field mustard | nucleus | 87.66 | 87.47 |
| Bra008218.1-P | Field mustard | nucleus | 84.2 | 87.22 |
| CDY39052 | Canola | nucleus | 83.98 | 87.0 |
| VIT_18s0001g14130.t01 | Wine grape | vacuole | 65.58 | 72.31 |
| KRH17425 | Soybean | nucleus | 63.42 | 70.77 |
| KRH05942 | Soybean | nucleus | 63.42 | 70.26 |
| PGSC0003DMT400025521 | Potato | plastid | 46.1 | 67.83 |
| GSMUA_Achr11P... | Banana | nucleus | 36.15 | 64.23 |
| Solyc04g081370.2.1 | Tomato | extracellular, vacuole | 62.34 | 63.86 |
| TraesCS2A01G004600.1 | Wheat | nucleus | 38.74 | 52.96 |
| GSMUA_Achr8P19240_001 | Banana | nucleus | 44.59 | 48.82 |
| GSMUA_Achr11P... | Banana | nucleus | 45.89 | 46.19 |
| Os04t0115500-00 | Rice | nucleus | 46.54 | 44.79 |
| Zm00001d004497_P001 | Maize | nucleus, plastid | 43.94 | 44.23 |
| TraesCSU01G012300.1 | Wheat | nucleus, plastid | 45.67 | 43.51 |
| TraesCS2D01G004200.1 | Wheat | nucleus, plastid | 45.67 | 42.97 |
| Zm00001d024883_P001 | Maize | nucleus | 46.32 | 41.8 |
| EES10376 | Sorghum | nucleus | 46.97 | 40.04 |
| AT4G27240.1 | Thale cress | nucleus | 35.06 | 37.59 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 19.91 | 34.85 |
| AT1G11490.2 | Thale cress | mitochondrion | 27.06 | 34.25 |
| AT5G54630.1 | Thale cress | nucleus | 34.63 | 33.9 |
| AT1G62520.1 | Thale cress | nucleus | 20.35 | 33.57 |
| AT4G12450.1 | Thale cress | cytosol | 19.91 | 33.21 |
| AT2G29660.1 | Thale cress | golgi, plasma membrane | 26.41 | 32.71 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.90.228.10 | EntrezGene:843905 | UniProt:A0A178WFR3 | ProteinID:AAF87132.1 | ProteinID:AEE35748.1 |
| ArrayExpress:AT1G75710 | EnsemblPlantsGene:AT1G75710 | RefSeq:AT1G75710 | TAIR:AT1G75710 | RefSeq:AT1G75710-TAIR-G | EnsemblPlants:AT1G75710.1 |
| TAIR:AT1G75710.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR013087 |
| RefSeq:NP_177700.1 | ProteinID:OAP17178.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF22 |
| UniProt:Q9LR10 | SUPFAM:SSF56399 | UniParc:UPI00000A5662 | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
Coordinates
chr1:+:28428671..28431339
Molecular Weight (calculated)
49904.1 Da
IEP (calculated)
9.730
GRAVY (calculated)
-0.477
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.