Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47503 | Canola | nucleus | 92.07 | 90.6 |
| Bra015824.1-P | Field mustard | nucleus | 97.44 | 90.28 |
| CDY13543 | Canola | nucleus | 88.11 | 87.5 |
| CDY39052 | Canola | nucleus | 88.81 | 85.43 |
| AT1G75710.1 | Thale cress | nucleus | 88.34 | 82.03 |
| VIT_18s0001g14130.t01 | Wine grape | vacuole | 68.07 | 69.69 |
| KRH17425 | Soybean | nucleus | 66.2 | 68.6 |
| KRH05942 | Soybean | nucleus | 65.97 | 67.87 |
| GSMUA_Achr11P... | Banana | nucleus | 38.69 | 63.85 |
| CDY20903 | Canola | nucleus, plastid | 60.61 | 62.05 |
| CDY06723 | Canola | nucleus, plastid | 59.67 | 61.1 |
| CDY16999 | Canola | nucleus, plastid | 55.94 | 57.97 |
| CDY17799 | Canola | nucleus, plastid | 57.81 | 57.14 |
| TraesCS2A01G004600.1 | Wheat | nucleus | 40.09 | 50.89 |
| GSMUA_Achr8P19240_001 | Banana | nucleus | 47.09 | 47.87 |
| GSMUA_Achr11P... | Banana | nucleus | 48.95 | 45.75 |
| Os04t0115500-00 | Rice | nucleus | 49.65 | 44.38 |
| Zm00001d004497_P001 | Maize | nucleus, plastid | 46.62 | 43.57 |
| TraesCSU01G012300.1 | Wheat | nucleus, plastid | 48.25 | 42.68 |
| TraesCS2D01G004200.1 | Wheat | nucleus, plastid | 48.25 | 42.16 |
| Zm00001d024883_P001 | Maize | nucleus | 48.48 | 40.62 |
| EES10376 | Sorghum | nucleus | 50.12 | 39.67 |
| CDY29286 | Canola | nucleus | 35.9 | 37.47 |
| CDX89265 | Canola | nucleus | 36.36 | 36.53 |
| CDY42181 | Canola | cytosol | 21.68 | 36.05 |
| CDX76365 | Canola | cytosol | 21.45 | 35.66 |
| CDY06635 | Canola | nucleus | 35.43 | 34.55 |
| CDY28761 | Canola | nucleus | 35.43 | 34.0 |
| CDX97869 | Canola | golgi | 28.44 | 33.15 |
| CDY16714 | Canola | cytosol | 21.45 | 33.09 |
| CDY63658 | Canola | cytosol | 21.21 | 32.73 |
| CDY18344 | Canola | nucleus | 34.5 | 32.67 |
| CDX97964 | Canola | cytosol | 27.27 | 32.59 |
| CDY12954 | Canola | nucleus | 19.81 | 32.2 |
| CDY19564 | Canola | nucleus | 19.58 | 31.82 |
| CDY02000 | Canola | golgi | 27.74 | 31.65 |
| CDY49785 | Canola | cytosol | 26.34 | 31.56 |
| CDY51355 | Canola | golgi | 26.81 | 31.0 |
| CDY45464 | Canola | golgi | 27.97 | 25.86 |
Protein Annotations
| EnsemblPlants:CDX73189 | EnsemblPlantsGene:GSBRNA2T00103682001 | Gene3D:3.90.228.10 | GO:A0A078CAG9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF22 | PFscan:PS50157 |
| ProteinID:CDX73189 | ProteinID:CDX73189.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI0004EEFC34 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
BnaC06g36370D
Coordinates
chrLK031797:+:2608243..2610531
Molecular Weight (calculated)
46537.4 Da
IEP (calculated)
9.665
GRAVY (calculated)
-0.476
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MALLTILPES AEPPKHTPPP SKRKKRENHT EQPHKPQKPH KPQKQKAAAP QKQPSSWDQI KNLLTCKQIE GSRVHDPSKN SQPAPSTAAN LSPSKLSSSC
101: SSICSFRDVA HGNTRVVHRA DNSPDVAKSA TPDSETRLLT RKPGQHGSSS RSLTAMQFRK LSGCYECHMI VDPSRYPISP RVCACSQCGE VFPKLESLEL
201: HQAVRHAVSE LGPEDSGRNI VEIIFKSSWL KKDSPICKIE RILKVHNTQR TIQRFEDCRD AVKARALQTA RKDARCAADG NELLRFHCTT LTCSLGSRGS
301: SSLCSNLPNC GVCNVIRHGF QGKSGAGGVT AAANSSGGVR TTASSGRADD LLRCSDDARR VMLVCRVIAG RVKRAPVEDN STVGASTSGG VFDSVAVNAG
401: VYSNLEELVV YNPRAILPCF VVIYKVLES
101: SSICSFRDVA HGNTRVVHRA DNSPDVAKSA TPDSETRLLT RKPGQHGSSS RSLTAMQFRK LSGCYECHMI VDPSRYPISP RVCACSQCGE VFPKLESLEL
201: HQAVRHAVSE LGPEDSGRNI VEIIFKSSWL KKDSPICKIE RILKVHNTQR TIQRFEDCRD AVKARALQTA RKDARCAADG NELLRFHCTT LTCSLGSRGS
301: SSLCSNLPNC GVCNVIRHGF QGKSGAGGVT AAANSSGGVR TTASSGRADD LLRCSDDARR VMLVCRVIAG RVKRAPVEDN STVGASTSGG VFDSVAVNAG
401: VYSNLEELVV YNPRAILPCF VVIYKVLES
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.