CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024883_P001	Maize	nucleus	79.52	84.18
Zm00001d004497_P001	Maize	nucleus, plastid	68.45	80.83
Os04t0115500-00	Rice	nucleus	64.76	73.12
TraesCS2A01G004600.1	Wheat	nucleus	45.2	72.49
TraesCSU01G012300.1	Wheat	nucleus, plastid	59.78	66.8
TraesCS2D01G004200.1	Wheat	nucleus, plastid	59.96	66.19
GSMUA_Achr11P...	Banana	nucleus	31.0	64.62
GSMUA_Achr8P19240_001	Banana	nucleus	43.73	56.16
PGSC0003DMT400025521	Potato	plastid	30.63	52.87
GSMUA_Achr11P...	Banana	nucleus	44.28	52.29
CDX73189	Canola	nucleus	39.67	50.12
KRH17425	Soybean	nucleus	37.82	49.52
CDY47503	Canola	nucleus	39.48	49.08
VIT_18s0001g14130.t01	Wine grape	vacuole	37.64	48.69
KRH05942	Soybean	nucleus	37.08	48.2
CDY13543	Canola	nucleus	37.82	47.45
AT1G75710.1	Thale cress	nucleus	40.04	46.97
Bra014094.1-P	Field mustard	plastid	36.16	46.89
CDY39052	Canola	nucleus	38.56	46.86
Bra015824.1-P	Field mustard	nucleus	39.85	46.65
Bra008218.1-P	Field mustard	nucleus	38.19	46.41
CDY20903	Canola	nucleus, plastid	35.79	46.3
Solyc04g081370.2.1	Tomato	extracellular, vacuole	38.19	45.9
Bra015598.1-P	Field mustard	plastid	35.24	45.58
CDY06723	Canola	nucleus, plastid	35.06	45.35
CDY16999	Canola	nucleus, plastid	32.29	42.27
CDY17799	Canola	nucleus, plastid	33.76	42.17
EES11701	Sorghum	nucleus	32.84	35.96
KXG27839	Sorghum	nucleus, plastid	28.97	34.89
KXG31078	Sorghum	plastid	17.71	30.38
KXG38947	Sorghum	mitochondrion	16.79	28.44
PGSC0003DMT400076665	Potato	cytosol	8.3	28.3
EES03733	Sorghum	nucleus	26.75	27.72
EER92505	Sorghum	extracellular, plasma membrane	22.88	27.25
EER88828	Sorghum	cytosol	19.19	24.07

Protein Annotations

EnsemblPlants:EES10376	EnsemblPlantsGene:SORBI_3006G009500	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF20	PFscan:PS50157	ProteinID:EES10376	ProteinID:EES10376.2
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI00081AD872	UniProt:C5YBQ3	MapMan:15.5.15

Description

hypothetical protein

Coordinates

chr6:+:1396241..1402046

Molecular Weight (calculated)

55922.0 Da

IEP (calculated)

9.942

GRAVY (calculated)

-0.372

Length

542 amino acids

Sequence
(BLAST)

001: MALATLLLPS SGGSTATKAG TGDHRTDSRR QHDHHHHHHG SKRKKKAPPS PQPSLPSSSA PRTPPAGARS HRVVMAASSS SSSSRKSPAM SMVPAAAGKN
101: NNHAQYQYQQ RRGHQATTKK ASTAASSSSS SWEQVKSLLS CRSATAAARV HDPSAPSALA RLRGAGGAGT CGASLCAMRD VVVDAASSAA SSSAAASASD
201: TAPLNRRRAH RGGASSSSTA GNSGTSSSHH SSSLRPRGLS GCYECRAINV EPMSRRYPRP REVCACPQCG EVFTKADTLE HHQAIRHAVS ELGPEDSGRN
301: IVEIIFKSSW QKRDRRRSIC HIDRILKVHN APRTVARFEA YRDAVRSRCR AVVAARAAAD GNELLRFHSA PLACSLGLSG ATALCCSSGA AAAGAAADDD
401: ADAAASSPCG VCTAIRHGFA PWVGAHPLGV RTTASSGRAH DCGSSSASPS SSSSVPAASD VNGPAAAGCR AMLVCRVIAG RVRRDGGDTS SSAAAEEDGP
501: FDSVAGEDAA SSSVYGNLEE LFVANPRAIL PCFVVIYRVL DS

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.