CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88427
EER90880
EER98550
EES03295
EES07517
EES07849
KXG22639
KXG22761
KXG29961

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	EER90880	AT1G05410.1	21798944
AT4G12450.1	EER98550	AT2G23290.1	21798944
AT4G12450.1	EES07849	AT3G08530.1	21798944
AT4G12450.1	KXG22761	AT3G08530.1	21798944
AT4G12450.1	EES07517	AT3G48150.1	21798944
AT4G12450.1	EER88427	AT4G01090.1	21798944
AT4G12450.1	EES03295	AT4G01090.1	21798944
AT4G12450.1	KXG22639	AT4G01090.1	21798944
AT4G12450.1	KXG29961	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029869_P001	Maize	mitochondrion	82.81	86.32
Zm00001d047106_P001	Maize	plastid	77.19	83.45
Os10t0554001-01	Rice	cytosol	46.25	81.32
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	64.06	70.93
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	64.38	70.07
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	63.75	69.62
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	63.75	69.62
GSMUA_Achr5P15290_001	Banana	nucleus	41.25	51.97
GSMUA_Achr2P10020_001	Banana	cytosol	41.56	49.63
GSMUA_Achr7P07110_001	Banana	cytosol	42.19	48.91
GSMUA_Achr4P27010_001	Banana	plastid	42.81	47.9
GSMUA_Achr1P01700_001	Banana	nucleus	43.75	47.46
GSMUA_Achr4P30380_001	Banana	cytosol	41.56	47.0
Solyc08g079010.1.1	Tomato	cytosol	22.81	46.2
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	42.5	46.1
KXG31078	Sorghum	plastid	39.38	39.87
KRH57359	Soybean	cytosol	35.31	39.51
KRH28045	Soybean	mitochondrion	35.0	39.3
VIT_02s0154g00220.t01	Wine grape	cytosol	34.69	38.81
KRH77393	Soybean	mitochondrion	34.06	38.38
KRH04088	Soybean	cytosol	34.69	38.14
AT4G12450.1	Thale cress	cytosol	32.5	37.55
CDY63658	Canola	cytosol	32.5	37.41
CDY42181	Canola	cytosol	30.0	37.21
Bra020842.1-P	Field mustard	cytosol	30.0	37.21
CDX76365	Canola	cytosol	30.0	37.21
PGSC0003DMT400012224	Potato	nucleus	34.69	37.12
CDY16714	Canola	cytosol	32.19	37.05
Bra029455.1-P	Field mustard	cytosol	32.19	37.05
AT1G62520.1	Thale cress	nucleus	31.56	36.07
AT4G22560.1	Thale cress	cytosol, plastid	29.38	35.61
CDY19564	Canola	nucleus	28.75	34.85
CDY12954	Canola	nucleus	28.75	34.85
Bra027038.1-P	Field mustard	cytosol, plastid	28.75	34.85
KRH37293	Soybean	plastid	13.75	28.57
EER92505	Sorghum	extracellular, plasma membrane	28.12	19.78
EES11701	Sorghum	nucleus	27.81	17.98
EER88828	Sorghum	cytosol	24.06	17.82
KXG27839	Sorghum	nucleus, plastid	24.69	17.56
EES10376	Sorghum	nucleus	28.44	16.79
EES03733	Sorghum	nucleus	27.19	16.63

Protein Annotations

EnsemblPlants:KXG38947	EnsemblPlantsGene:SORBI_3001G303000	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF6	ProteinID:KXG38947
ProteinID:KXG38947.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI00081AE312	UniProt:A0A1B6QM22	MapMan:15.5.15

Description

hypothetical protein

Coordinates

chr1:+:58634784..58637175

Molecular Weight (calculated)

32943.4 Da

IEP (calculated)

10.600

GRAVY (calculated)

-0.240

Length

320 amino acids

Sequence
(BLAST)

001: MATAWVRSLS CRSSYAVTDA AIAPSPAKKP PPQQPPPFSC ATAAAADVMD AVAYAQQARR KKMGRERERE RRREAREPRP RPKKKPKPMA KAKAKDAEAA
101: AAGALFMPSP APGPPVSSAF LTMAELPEGH SSRRVVELIF ASGWRGGGGG GGGGGGAADA GAPEPSVEAL FRVHSASRAV ARFEEARAAA RAHGAAARCG
201: ADGNEMMRFQ CRAPADAPGG VFGAGVATCR LGASVSAVRT FACSGAAHAS SSGGGATTAG RRAMLVCRVI AGRVCPANHH PSPRHGHAEP AYDSVDMGNG
301: ELVVLDSRAV LPCFLIIYKV

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.