CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	88.13	86.8
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	70.99	74.77
TraesCS4D01G215000.1	Wheat	golgi	70.55	74.31
HORVU4Hr1G061070.1	Barley	golgi	71.65	74.09
TraesCS4B01G214400.1	Wheat	golgi	70.11	73.67
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	73.85	72.1
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	41.98	51.48
VIT_06s0004g06240.t01	Wine grape	plastid	33.63	45.95
CDX97869	Canola	golgi	35.6	44.02
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	35.82	43.82
CDY51355	Canola	golgi	35.6	43.67
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	36.04	43.5
CDY02000	Canola	golgi	35.6	43.09
AT2G29660.1	Thale cress	golgi, plasma membrane	35.16	42.9
PGSC0003DMT400078031	Potato	extracellular, vacuole	34.07	41.67
KRG98330	Soybean	endoplasmic reticulum, golgi	34.95	41.62
Solyc06g076820.1.1	Tomato	extracellular, vacuole	34.07	40.79
CDY45464	Canola	golgi	35.82	35.13
KXG38947	Sorghum	mitochondrion	19.78	28.12
KXG31078	Sorghum	plastid	18.68	26.9
EES11701	Sorghum	nucleus	29.23	26.87
KXG27839	Sorghum	nucleus, plastid	25.49	25.78
EER88828	Sorghum	cytosol	21.76	22.92
EES10376	Sorghum	nucleus	27.25	22.88
EES03733	Sorghum	nucleus	25.49	22.18

Protein Annotations

EnsemblPlants:EER92505	EnsemblPlantsGene:SORBI_3001G427600	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF4	ProteinID:EER92505	ProteinID:EER92505.1
RefSeq:XP_002465507.1	ScanProsite:PS00028	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF56399	UniParc:UPI0001A8263D
UniProt:C5WQ57	MapMan:15.5.15	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:70676517..70678972

Molecular Weight (calculated)

47557.7 Da

IEP (calculated)

8.803

GRAVY (calculated)

-0.014

Length

455 amino acids

Sequence
(BLAST)

001: MAGSGGGSLL RGFLSLFFLL FLHIGHASCC FSPGGPAARA REEDEAADGD GDGKVGGGGG GSSKRRKISP LIFSPAASSS AVTSDSVRGG APRRHVSSLA
101: TSLRFYLHRI FSSSSSGSGA KNGGTVAGSR EEEEAVTTTV SSPLAAQSLP HQPSTSVVLS TPSSPCASSP FMSPLSVRSL SATPVPSSPQ KLLQASRQSS
201: RSFAARGDVF PCKVCGEVLG RPHLLELHQA MKHSLSELTH LDSSLNIIRM IFLAGWKPAA ASGAGAGEAP AVRRILRIHH NPRALARFEE YRDLVRARAA
301: RRCGDEGAVV EERCIADGNE RLRFHCSTML CSLGGGGVCG SPYCCVCSTL RHGFAGKQAD VDGIATYASA WAAHASLPGD VEREFAFLQV RRAMLVCRVV
401: AGRVARGPAD DKVAYDSMVP VRGGVSSAVG ADDVELLVYN PRAVLPCFVI LYSSS

Best Arabidopsis Sequence Match ( AT2G29660.1 )
(BLAST)

001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV

Arabidopsis Description

At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.