Factsheet for HORVU4Hr1G061070.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	94.09	95.83
TraesCS4B01G214400.1	Wheat	golgi	93.41	94.92
TraesCS4D01G215000.1	Wheat	golgi	92.95	94.68
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	77.5	73.18
EER92505	Sorghum	extracellular, plasma membrane	74.09	71.65
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	72.27	68.83
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	43.86	52.02
VIT_06s0004g06240.t01	Wine grape	plastid	33.86	44.74
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	36.36	42.44
CDY02000	Canola	golgi	35.91	42.02
PGSC0003DMT400078031	Potato	extracellular, vacuole	35.45	41.94
AT2G29660.1	Thale cress	golgi, plasma membrane	35.45	41.82
CDY51355	Canola	golgi	35.23	41.78
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	35.23	41.67
CDX97869	Canola	golgi	34.77	41.58
Solyc06g076820.1.1	Tomato	extracellular, vacuole	35.45	41.05
KRG98330	Soybean	endoplasmic reticulum, golgi	35.23	40.58
HORVU2Hr1G125620.2	Barley	nucleus	8.18	35.64
CDY45464	Canola	golgi	36.14	34.27
HORVU6Hr1G063400.2	Barley	plastid	18.41	28.83
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	18.41	27.55
HORVU4Hr1G019890.1	Barley	nucleus	24.09	24.65
HORVU3Hr1G077490.2	Barley	nucleus	26.36	23.92

Protein Annotations

EnsemblPlants:HORVU4Hr1G061070.1	EnsemblPlantsGene:HORVU4Hr1G061070	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF4	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF56399	TMHMM:TMhelix	UniParc:UPI000B476DC4	UniProt:A0A287PB96
MapMan:15.5.15	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:512989821..512992961

Molecular Weight (calculated)

46419.6 Da

IEP (calculated)

8.281

GRAVY (calculated)

-0.046

Length

440 amino acids

Sequence
(BLAST)

001: MAGGARCSAL LRGFLSLFFV MFLHIGHAGC CFSPGPASQQ HEEDDAGAAS SGSSSKRRKI SPLAFSPAVS SSTGVEERAG ARRRGRHVSS LATSLRCYIH
101: RIFSSAGPRN AVPGGEEEEE AVTTTVSSSP LAQSVTRRQT SVLLSTPSSP CASPFLSPMS PQSLSVTPLV PCSPLATRQL SRSFAARGDL FPCKVCGEVL
201: SKPQQLELHQ AMKHSLSELT HLDSSMNIIR MIFLAGWGLP ASGAGAGAGD PPAVGRILRI HHNPRALSRF EEYRDLVRAR AARRCAGASG AVVEERCIAD
301: GNERLRFHCA TMLCSLGAGV CGSPYCCTCT ILRHGFAGKQ ADVDGIATYS SGWAAHASLP EEVEREFAFL QVRRAMLVCR VVAGRVVRGG DGDGDGDKVA
401: YDSMVPVPPG GGGRGGEDDG ELLVFNPRAV LPCFVIMYGG

Best Arabidopsis Sequence Match ( AT2G29660.1 )
(BLAST)

001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV

Arabidopsis Description

At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.