Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 5
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G215000.1 | Wheat | golgi | 53.37 | 45.83 |
| TraesCS4A01G089900.1 | Wheat | endoplasmic reticulum, golgi | 53.1 | 45.6 |
| TraesCS4B01G214400.1 | Wheat | golgi | 52.56 | 45.03 |
| HORVU4Hr1G061070.1 | Barley | golgi | 52.02 | 43.86 |
| VIT_06s0004g06240.t01 | Wine grape | plastid | 39.35 | 43.84 |
| GSMUA_Achr6P17990_001 | Banana | nucleus | 29.11 | 42.02 |
| EER92505 | Sorghum | extracellular, plasma membrane | 51.48 | 41.98 |
| Os03t0264600-00 | Rice | endoplasmic reticulum, nucleus | 52.56 | 41.85 |
| PGSC0003DMT400078031 | Potato | extracellular, vacuole | 40.7 | 40.59 |
| Zm00001d028537_P001 | Maize | endoplasmic reticulum, plasma membrane | 50.4 | 40.48 |
| GSMUA_Achr6P19070_001 | Banana | cytosol | 14.29 | 40.15 |
| KRG98330 | Soybean | endoplasmic reticulum, golgi | 40.97 | 39.79 |
| Solyc06g076820.1.1 | Tomato | extracellular, vacuole | 40.7 | 39.74 |
| AT2G29660.1 | Thale cress | golgi, plasma membrane | 39.89 | 39.68 |
| CDX97869 | Canola | golgi | 38.81 | 39.13 |
| CDY02000 | Canola | golgi | 39.62 | 39.1 |
| Bra018369.1-P | Field mustard | extracellular, golgi, plastid | 39.62 | 38.99 |
| CDY51355 | Canola | golgi | 38.81 | 38.81 |
| GSMUA_Achr11P... | Banana | nucleus | 26.95 | 38.46 |
| Bra039993.1-P | Field mustard | extracellular, golgi, plastid | 38.54 | 38.44 |
| GSMUA_Achr11P... | Banana | cytosol | 26.68 | 36.67 |
| GSMUA_Achr9P00350_001 | Banana | nucleus | 27.49 | 35.79 |
| GSMUA_Achr2P08150_001 | Banana | nucleus, plastid | 29.65 | 33.23 |
| CDY45464 | Canola | golgi | 39.35 | 31.47 |
| GSMUA_Achr5P15290_001 | Banana | nucleus | 20.75 | 30.32 |
| GSMUA_Achr2P10020_001 | Banana | cytosol | 21.02 | 29.1 |
| GSMUA_Achr5P01120_001 | Banana | nucleus, plastid | 30.19 | 29.09 |
| GSMUA_Achr7P07110_001 | Banana | cytosol | 21.56 | 28.99 |
| GSMUA_Achr9P29950_001 | Banana | cytosol | 29.11 | 28.8 |
| GSMUA_Achr8P30300_001 | Banana | nucleus | 29.65 | 28.5 |
| GSMUA_Achr6P24320_001 | Banana | cytosol | 25.61 | 28.19 |
| GSMUA_Achr4P27010_001 | Banana | plastid | 21.56 | 27.97 |
| GSMUA_Achr4P30380_001 | Banana | cytosol | 21.29 | 27.92 |
| GSMUA_Achr7P19590_001 | Banana | cytosol | 6.47 | 27.91 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.95 | 27.78 |
| GSMUA_Achr1P01700_001 | Banana | nucleus | 21.83 | 27.46 |
| GSMUA_Achr8P19240_001 | Banana | nucleus | 31.0 | 27.25 |
| GSMUA_Achr5P13520_001 | Banana | cytosol, mitochondrion, peroxisome | 21.29 | 26.78 |
| GSMUA_Achr1P08590_001 | Banana | nucleus | 29.38 | 26.14 |
| GSMUA_Achr9P24720_001 | Banana | cytosol | 25.34 | 26.04 |
| GSMUA_Achr11P... | Banana | nucleus | 31.27 | 25.27 |
| GSMUA_Achr6P19060_001 | Banana | nucleus | 11.05 | 18.14 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P00200_001 | EnsemblPlants:GSMUA_Achr10T00200_001 | EnsemblPlantsGene:GSMUA_Achr10G00200_001 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF4 | ScanProsite:PS00028 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF56399 | TMHMM:TMhelix | UniParc:UPI000294EEB4 | UniProt:M0RE47 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Putative uncharacterized protein Sb01g040170 [Source:GMGC_GENE;Acc:GSMUA_Achr10G00200_001]
Coordinates
chr10:-:559140..560358
Molecular Weight (calculated)
40630.2 Da
IEP (calculated)
8.093
GRAVY (calculated)
-0.253
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTEGSCFSS FLSLFVLLLL HLGCFFFSCS SSDDPPPPIK RRKISPFFPT LPVPSDPRTK KPLSIRSYLS RLLSFRKPNS ENQEQHRRSP IELISLSPDG
101: RADGQARLYV ADHHSLSYKD EIYPCPACGE VLSKPQLLDL HHAAKHSFSE LRDADSGYNI VRIIFRSGWI GESSLVVRRI LKIHNTTRTL ARYEEYRDAV
201: RSRAARYEAS NGGRGDGRCI ADGNERLRFY CTTILCSREA ERRGGAAPAG ACGSPYCCAC AIVRHGFTGK HADLDGIATY STSWGAHASL PEDLEREFAF
301: LGARRAMLVC RVVAGRVAHG HGEAAEEEEK GAGFDSVVPN GGGGGGAVGE DELLVYSPRA VLPCFVVIYT A
101: RADGQARLYV ADHHSLSYKD EIYPCPACGE VLSKPQLLDL HHAAKHSFSE LRDADSGYNI VRIIFRSGWI GESSLVVRRI LKIHNTTRTL ARYEEYRDAV
201: RSRAARYEAS NGGRGDGRCI ADGNERLRFY CTTILCSREA ERRGGAAPAG ACGSPYCCAC AIVRHGFTGK HADLDGIATY STSWGAHASL PEDLEREFAF
301: LGARRAMLVC RVVAGRVAHG HGEAAEEEEK GAGFDSVVPN GGGGGGAVGE DELLVYSPRA VLPCFVVIYT A
001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV
Arabidopsis Description
At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [golgi,plasma membrane]
SUBAcon: [golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.