Factsheet for TraesCS4A01G089900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G215000.1	Wheat	golgi	95.6	95.6
HORVU4Hr1G061070.1	Barley	golgi	95.83	94.09
TraesCS4B01G214400.1	Wheat	golgi	94.21	94.0
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	79.4	73.61
EER92505	Sorghum	extracellular, plasma membrane	74.77	70.99
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	72.69	67.97
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	45.6	53.1
VIT_06s0004g06240.t01	Wine grape	plastid	34.72	45.05
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	37.27	42.71
PGSC0003DMT400078031	Potato	extracellular, vacuole	36.57	42.47
CDY02000	Canola	golgi	36.81	42.29
AT2G29660.1	Thale cress	golgi, plasma membrane	36.34	42.09
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	36.11	41.94
CDX97869	Canola	golgi	35.65	41.85
Solyc06g076820.1.1	Tomato	extracellular, vacuole	36.81	41.84
CDY51355	Canola	golgi	35.88	41.78
KRG98330	Soybean	endoplasmic reticulum, golgi	35.88	40.58
TraesCS2A01G569700.1	Wheat	nucleus	23.61	38.93
CDY45464	Canola	golgi	37.04	34.48
TraesCS5A01G536800.1	Wheat	cytosol	15.28	34.38
TraesCS2A01G004600.1	Wheat	nucleus	26.16	33.43
TraesCS6A01G248100.1	Wheat	plastid	18.98	29.6
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	18.75	27.65
TraesCS4A01G207500.1	Wheat	nucleus	24.77	24.65
TraesCS3A01G324600.1	Wheat	nucleus	26.16	22.29

Protein Annotations

EnsemblPlants:TraesCS4A01G089900.1	EnsemblPlantsGene:TraesCS4A01G089900	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF4	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF56399	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr4A:-:96271201..96272891

Molecular Weight (calculated)

45866.0 Da

IEP (calculated)

8.368

GRAVY (calculated)

-0.047

Length

432 amino acids

Sequence
(BLAST)

001: MAGGARCSSL LRGFLSLFFV MFLHVGHAGC CFSPGSASQQ HEEDDAGAAG ISSKRRKISP LAFSPAVSSS TGVEERAGAR RRARHVSSLA TSLRCYIHRI
101: FSSGGPKNAV PAGEEEETVT TTVSSPLAQS VTQRQASVVL STPSSPCASP FLSPMSPQSL SVTPLVPCSP LATRQLSRSF AARGDLYPCK VCGEVLSKPQ
201: QLELHQAMKH SLSELTHLDS SMNIIRMIFL AGWGLPAAGT GDPPAVRRIL RIHHNPRALS RFEEYRDLVR ARAARRCAGA SGAVVEERCI ADGNERLRFH
301: CATMLCSLGA GVCGSPYCCT CTILRHGFAG KQADVDGIAT YSSGWAAHAS LPDEVEREFA FLQVRRAMLV CRVVAGRVVR GGDGDGDGDK VGYDSMVPVP
401: PGGGGRGGED DGELLVFNPR AVLPCFVIMY GS

Best Arabidopsis Sequence Match ( AT2G29660.1 )
(BLAST)

001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV

Arabidopsis Description

At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.