Factsheet for Solyc06g076820.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078031	Potato	extracellular, vacuole	92.11	94.09
VIT_06s0004g06240.t01	Wine grape	plastid	53.42	60.96
KRG98330	Soybean	endoplasmic reticulum, golgi	54.74	54.45
AT2G29660.1	Thale cress	golgi, plasma membrane	51.58	52.55
CDX97869	Canola	golgi	50.79	52.45
CDY02000	Canola	golgi	51.84	52.39
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	51.84	52.25
CDY51355	Canola	golgi	50.26	51.48
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	50.26	51.34
CDY45464	Canola	golgi	51.58	42.24
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	39.74	40.7
Solyc08g079010.1.1	Tomato	cytosol	16.32	39.24
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	41.84	36.81
TraesCS4D01G215000.1	Wheat	golgi	41.84	36.81
TraesCS4B01G214400.1	Wheat	golgi	41.58	36.49
HORVU4Hr1G061070.1	Barley	golgi	41.05	35.45
EER92505	Sorghum	extracellular, plasma membrane	40.79	34.07
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	40.0	32.62
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	39.47	32.47
Solyc11g013220.1.1	Tomato	nucleus	34.21	32.26
Solyc04g081370.2.1	Tomato	extracellular, vacuole	35.0	29.49
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	31.84	28.34
Solyc02g079920.2.1	Tomato	cytosol	30.53	27.55

Protein Annotations

EnsemblPlants:Solyc06g076820.1.1	EnsemblPlantsGene:Solyc06g076820.1	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF4	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	SignalP:SignalP-noTM	SMART:SM00355	SUPFAM:SSF56399	UniParc:UPI00027672EB	UniProt:K4CA40
MapMan:15.5.15	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:47718143..47719285

Molecular Weight (calculated)

42717.8 Da

IEP (calculated)

8.096

GRAVY (calculated)

-0.358

Length

380 amino acids

Sequence
(BLAST)

001: MAAPTLFRPI FSNFLSLLFL LLHLGCFVFS PSSSSSQNHS SKKRKHSSNL NSSPPPPSTR LKSSTTNAIS SSWSYIKRIF SSNKQKINNT QTHNNPSIQS
101: PCSSTRSLQK PISSDDLINR SVSPIPESEI TSDQLFFPLR NDIYPCTLCG EVFQSPIHLE QHQSIKHAIS ELTDEDSGNN IVRIIFQTGW VDKEKNPVIN
201: RILKIHNSKR ILSRFEEYRE CVKLKASRNA AVKRDERCIA DGNEVLRFHC TTFICELGQN GNSSLCTQQY CSVCGIIKSG FSHKMDGISM QPNSWRGHVS
301: VPEEIEEEFG FMNVKRAMLV CRVIAGRVGC DPGYVDKEDS GFDSLVGREN GSHMRLDEED ELLVFNSRAV LPCFVIVYTV

Best Arabidopsis Sequence Match ( AT2G29660.1 )
(BLAST)

001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV

Arabidopsis Description

At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.