Factsheet for Bra018369.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02000	Canola	golgi	98.67	98.94
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	85.41	86.56
AT2G29660.1	Thale cress	golgi, plasma membrane	83.55	84.45
CDY45464	Canola	golgi	99.73	81.03
VIT_06s0004g06240.t01	Wine grape	plastid	53.58	60.66
KRG98330	Soybean	endoplasmic reticulum, golgi	54.38	53.66
PGSC0003DMT400078031	Potato	extracellular, vacuole	51.99	52.69
Solyc06g076820.1.1	Tomato	extracellular, vacuole	52.25	51.84
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	38.99	39.62
TraesCS4A01G089900.1	Wheat	endoplasmic reticulum, golgi	42.71	37.27
TraesCS4D01G215000.1	Wheat	golgi	42.44	37.04
TraesCS4B01G214400.1	Wheat	golgi	42.18	36.72
HORVU4Hr1G061070.1	Barley	golgi	42.44	36.36
EER92505	Sorghum	extracellular, plasma membrane	43.5	36.04
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	42.44	34.33
Zm00001d028537_P001	Maize	endoplasmic reticulum, plasma membrane	41.91	34.2
Bra027038.1-P	Field mustard	cytosol, plastid	22.02	31.44
Bra020842.1-P	Field mustard	cytosol	20.69	30.23
Bra014094.1-P	Field mustard	plastid	32.89	29.67
Bra015598.1-P	Field mustard	plastid	31.57	28.4
Bra029455.1-P	Field mustard	cytosol	20.69	28.06
Bra008218.1-P	Field mustard	nucleus	31.57	26.68
Bra015824.1-P	Field mustard	nucleus	32.1	26.13
Bra026366.1-P	Field mustard	nucleus	28.38	25.12
Bra019849.1-P	Field mustard	cytosol, mitochondrion	22.81	24.02
Bra022735.1-P	Field mustard	nucleus	29.44	23.47

Protein Annotations

EnsemblPlants:Bra018369.1	EnsemblPlants:Bra018369.1-P	EnsemblPlantsGene:Bra018369	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR013087	InterPro:Znf_C2H2_type
PANTHER:PTHR31681	PANTHER:PTHR31681:SF24	PFscan:PS50157	PFscan:PS51257	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF56399	TMHMM:TMhelix	UniParc:UPI0002547C94	UniProt:M4DPC8	MapMan:15.5.15	:

Description

AT2G29660 (E=8e-151) | zinc finger (C2H2 type) family protein

Coordinates

chrA05:-:7802454..7803587

Molecular Weight (calculated)

41573.9 Da

IEP (calculated)

8.790

GRAVY (calculated)

-0.190

Length

377 amino acids

Sequence
(BLAST)

001: MAARKLGSLL RQHFFSLFFL FVGCFFFPKG GDLRQKRRKK KKLRTVTSGS GLSSSWTYLK RVFLSTTRIS KSRNQTHPNG PLTTLTSARS SQNSLVTLVQ
101: PDPETRTENG FSDISSSDSP PFLPLRSEIF PCTTCGEIFP KPTLLEHHIA IKHAVSELVD GESSTNIVKI IFKSGWPEQG DNKKIPEIHR ILKIHNSPKI
201: LARFEEYREF VKAKAARGSG NGRWDDERCV VDGNELLRFY CSTFMCSLGQ NGSSGLCGHQ YCSICGIIGS GFSPKLDGIA TFATGWRGHV AVPEEVEEEF
301: GFMNVKRAML VCRVVAGRVG CDLIADDDVD KSGGGYDSLV GQGSGSKSGA LLRIDDEELL VFNPRAVLPC FVIVYTV

Best Arabidopsis Sequence Match ( AT2G29660.1 )
(BLAST)

001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD
101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE
201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN
301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV

Arabidopsis Description

At2g29660 [Source:UniProtKB/TrEMBL;Acc:O82389]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.