Factsheet for Bra019849.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97964	Canola	cytosol	98.88	98.61
AT1G11490.2	Thale cress	mitochondrion	75.42	73.97
GSMUA_Achr6P24320_001	Banana	cytosol	35.47	37.69
GSMUA_Achr9P24720_001	Banana	cytosol	36.03	35.73
Bra026366.1-P	Field mustard	nucleus	42.46	35.68
KRH10693	Soybean	nucleus	36.31	32.66
KRH21644	Soybean	nucleus	35.75	32.08
Bra022735.1-P	Field mustard	nucleus	41.34	31.29
TraesCS3D01G317900.1	Wheat	nucleus	41.9	31.18
HORVU3Hr1G077490.2	Barley	nucleus	42.18	31.13
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	41.62	30.72
TraesCS3B01G353600.1	Wheat	nucleus	41.62	30.66
Zm00001d012605_P001	Maize	nucleus	42.46	30.34
EER88828	Sorghum	cytosol	36.03	29.86
Bra020842.1-P	Field mustard	cytosol	21.51	29.84
Os06t0683000-01	Rice	cytosol, nucleus, plastid	38.55	29.68
TraesCS3A01G324600.1	Wheat	nucleus	41.9	29.59
KRH58632	Soybean	nucleus	29.89	29.56
Bra029455.1-P	Field mustard	cytosol	22.91	29.5
Zm00001d014485_P001	Maize	nucleus, plastid	36.03	29.45
Zm00001d043243_P001	Maize	nucleus	41.34	29.31
EES03733	Sorghum	nucleus	42.46	29.06
Bra027038.1-P	Field mustard	cytosol, plastid	20.11	27.27
Bra014094.1-P	Field mustard	plastid	31.56	27.03
Bra015598.1-P	Field mustard	plastid	31.56	26.97
Bra008218.1-P	Field mustard	nucleus	32.12	25.78
Bra015824.1-P	Field mustard	nucleus	33.24	25.7
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	24.58	23.66
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	24.02	22.81

Protein Annotations

EnsemblPlants:Bra019849.1	EnsemblPlants:Bra019849.1-P	EnsemblPlantsGene:Bra019849	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF23
SEG:seg	SUPFAM:SSF56399	UniParc:UPI000253EB80	UniProt:M4DTK6	MapMan:15.5.15	:

Description

AT1G11490 (E=7e-106) | zinc finger (C2H2 type) family protein

Coordinates

chrA06:-:4017098..4018245

Molecular Weight (calculated)

39658.8 Da

IEP (calculated)

9.839

GRAVY (calculated)

-0.309

Length

358 amino acids

Sequence
(BLAST)

001: MRGVWLYLKK SLSCCDAQKP SDPKKNLIQE MKNPSGCRRS MSNLRNEFVT YGDEGAMQNP SFRSSRSLES AKFINTMRFE GSGGASSSDL LSGRYSSERF
101: DVIGSDICGF GALSCRLCRQ RVRDLYAFET HYLTNHSVTR LLEGDFSRTT VELICNRGYS HKLGKTKGSN VSAILKVQNL QRVVAEFEKY RELVKIRATK
201: LSKKHSRCVA DGNEFLGFHG TTLSCSLGLS SNSGSSNLCF SDQCGVCQIL RHGFASKTRQ DGIKGVLTAS ACYAALEGIE MERGRSRGGV KAVVLCRVIA
301: GRVHKPMKKF EDPNGFSEFD SLALKVGPNA ILEELYLLRT KALLPCFVII FKPRNNTS

Best Arabidopsis Sequence Match ( AT1G11490.1 )
(BLAST)

001: MRGVWLYLKK SLSCCKAQKS TVACDPDKIQ IQKKENPSGC SRRSMSNLRD VFVTNGDEGA MQNVSCCSSR SLESSRFVNT VKFEENAGYS DRFKGLLSGA
101: SSSDLLPGRC SERFDVVGSD ICGFGVLACQ KCHERVRDLD AFEAHYLSNH SVVRLLAGDF SRTTVELICN TGYSHKLGKM KGNNISAIFK IQNLQRVVAD
201: FEDYRELVKI RANKLSKKHS RCMADGNEFL GFHGTTLSCT LGFSNSSSNL CFSDHCEVCH ILRHGFSPKT RPDGIKGVLT ASTSSTALES IETDQGRNRG
301: SLIAVVLCRV IAGRVHKPMQ TFENSLGFSE FDSLALKVGQ NSRIEELYLL STKALLPCFV IIFKP

Arabidopsis Description

Uncharacterized protein At1g11490 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUU5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.