Factsheet for GSMUA_Achr6P24320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P19070_001	Banana	cytosol	28.49	72.73
GSMUA_Achr9P24720_001	Banana	cytosol	74.18	69.25
GSMUA_AchrUn_...	Banana	cytosol	73.59	68.89
GSMUA_Achr1P08590_001	Banana	nucleus	77.74	62.83
GSMUA_Achr9P29950_001	Banana	cytosol	65.88	59.2
GSMUA_Achr6P19060_001	Banana	nucleus	34.42	51.33
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	68.84	47.84
TraesCS3D01G317900.1	Wheat	nucleus	67.36	47.19
HORVU3Hr1G077490.2	Barley	nucleus	67.36	46.8
Zm00001d043243_P001	Maize	nucleus	69.44	46.34
TraesCS3B01G353600.1	Wheat	nucleus	66.77	46.3
Zm00001d012605_P001	Maize	nucleus	67.66	45.51
EES03733	Sorghum	nucleus	69.73	44.93
TraesCS3A01G324600.1	Wheat	nucleus	66.77	44.38
Os06t0683000-01	Rice	cytosol, nucleus, plastid	57.27	41.51
GSMUA_Achr11P...	Banana	nucleus	29.97	38.85
EER88828	Sorghum	cytosol	49.55	38.66
GSMUA_Achr11P...	Banana	cytosol	30.27	37.78
Zm00001d014485_P001	Maize	nucleus, plastid	48.96	37.67
GSMUA_Achr6P17990_001	Banana	nucleus	27.89	36.58
GSMUA_Achr9P00350_001	Banana	nucleus	30.86	36.49
KRH10693	Soybean	nucleus	42.43	35.93
Bra019849.1-P	Field mustard	cytosol, mitochondrion	37.69	35.47
AT1G11490.2	Thale cress	mitochondrion	38.28	35.34
CDX97964	Canola	cytosol	37.39	35.1
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	34.12	34.74
CDY49785	Canola	cytosol	36.8	34.64
KRH21644	Soybean	nucleus	40.95	34.59
GSMUA_Achr8P30300_001	Banana	nucleus	36.2	31.61
KRH58632	Soybean	nucleus	33.23	30.94
GSMUA_Achr8P19240_001	Banana	nucleus	37.09	29.62
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	33.23	29.09
GSMUA_Achr7P19590_001	Banana	cytosol	7.42	29.07
GSMUA_Achr2P10020_001	Banana	cytosol	22.85	28.73
GSMUA_Achr4P30380_001	Banana	cytosol	23.44	27.92
GSMUA_Achr7P07110_001	Banana	cytosol	22.26	27.17
GSMUA_Achr5P15290_001	Banana	nucleus	20.47	27.17
GSMUA_Achr11P...	Banana	nucleus	36.8	27.02
GSMUA_Achr4P27010_001	Banana	plastid	22.85	26.92
GSMUA_Achr1P01700_001	Banana	nucleus	23.44	26.78
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	23.15	26.44
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	28.19	25.61

Protein Annotations

EnsemblPlants:GSMUA_Achr6P24320_001	EnsemblPlants:GSMUA_Achr6T24320_001	EnsemblPlantsGene:GSMUA_Achr6G24320_001	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19	ScanProsite:PS00028
SUPFAM:SSF56399	UniParc:UPI000295724B	UniProt:M0T9S8	MapMan:15.5.15	:	:

Description

Putative ZOS6-07 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G24320_001]

Coordinates

chr6:-:24862725..24864256

Molecular Weight (calculated)

36997.6 Da

IEP (calculated)

8.799

GRAVY (calculated)

-0.348

Length

337 amino acids

Sequence
(BLAST)

001: MPTVWFALKR SLHCKSEPSE VHDPKARGHL GSILTRKAGR SGCSRSIANL RDVIHGSKRH IEKPPSCSPR SIGSSEFINP ITHDVILNNS STPARKCPSF
101: SGDGEDHGPG GSSLATMHLQ KCSAAVTCHK CGEKFVKWET LEAHHLTKHA VSELVEGDSS RKIVEMICRT GWSKTDGSCG RIERVLKVHN MQKTLTLFEE
201: YRETVKMKAS KLPKKHPRCL ADGNELLSVC QIIRHGFTGN EETKGGIGVF TTSTSGRALE SIETDEDDTS VKKALLVCRV IAGRVHKPLD NYQELVGQCA
301: FDSLAGKVGL YANIEELYLL NPKALLPCFV VICKTLK

Best Arabidopsis Sequence Match ( AT4G27240.1 )
(BLAST)

001: MEASSTRSEK KKKKKTIQRE NTDTQKKKKL PSVWFSLKKS LPCKSDVSDV HIPRSKKELA PISTKRTTTS SGGGVGGRSG CSRSIANLKD VIHGNQRHLE
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P

Arabidopsis Description

At4g27240 [Source:UniProtKB/TrEMBL;Acc:O81827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.