Factsheet for Os01t0785900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, nucleus

Predictor Summary:

nucleus 3
peroxisome 1
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G317900.1	Wheat	nucleus	83.71	84.41
TraesCS3B01G353600.1	Wheat	nucleus	83.71	83.54
HORVU3Hr1G077490.2	Barley	nucleus	82.68	82.68
KRH25897	Soybean	cytosol	29.07	79.21
Zm00001d043243_P001	Maize	nucleus	82.47	79.21
TraesCS3A01G324600.1	Wheat	nucleus	82.68	79.09
Zm00001d012605_P001	Maize	nucleus	80.0	77.45
EES03733	Sorghum	nucleus	83.51	77.44
GSMUA_Achr6P19070_001	Banana	cytosol	19.79	72.73
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	62.06	70.16
VIT_00s1356g00010.t01	Wine grape	cytosol	55.05	69.17
GSMUA_Achr6P24320_001	Banana	cytosol	47.84	68.84
KRH22216	Soybean	cytosol, plastid	61.24	67.65
GSMUA_Achr1P08590_001	Banana	nucleus	58.14	67.63
GSMUA_Achr9P24720_001	Banana	cytosol	50.31	67.59
Solyc07g063970.2.1	Tomato	cytosol, nucleus, peroxisome	59.38	67.45
PGSC0003DMT400049491	Potato	cytosol, nucleus, peroxisome	59.79	67.44
KRH55605	Soybean	cytosol	61.24	67.35
GSMUA_Achr9P29950_001	Banana	cytosol	51.96	67.2
KRH27121	Soybean	cytosol, plastid	60.21	66.97
GSMUA_AchrUn_...	Banana	cytosol	49.07	66.11
PGSC0003DMT400055929	Potato	cytosol	55.26	64.27
Solyc02g079920.2.1	Tomato	cytosol	55.05	63.42
CDY29286	Canola	nucleus	53.2	62.77
CDY06635	Canola	nucleus	56.49	62.27
CDY28761	Canola	nucleus	56.91	61.74
Bra026366.1-P	Field mustard	nucleus	53.2	60.56
CDX89265	Canola	nucleus	53.2	60.42
AT4G27240.1	Thale cress	nucleus	53.2	59.86
Bra022735.1-P	Field mustard	nucleus	57.94	59.41
AT5G54630.1	Thale cress	nucleus	56.08	57.63
CDY18344	Canola	nucleus	52.78	56.51
GSMUA_Achr6P19060_001	Banana	nucleus	24.54	52.65
Os06t0683000-01	Rice	cytosol, nucleus, plastid	49.48	51.61
AT1G11490.2	Thale cress	mitochondrion	32.37	43.01
Bra019849.1-P	Field mustard	cytosol, mitochondrion	30.72	41.62
CDX97964	Canola	cytosol	30.52	41.23
CDY49785	Canola	cytosol	30.1	40.78
KRH10693	Soybean	nucleus	32.16	39.2
KRH21644	Soybean	nucleus	31.34	38.1
Os10t0554001-01	Rice	cytosol	14.23	37.91
KRH58632	Soybean	nucleus	27.84	37.29
Os04t0115500-00	Rice	nucleus	29.9	30.21
Os11t0169400-01	Rice	nucleus	26.39	30.12
Os04t0690100-01	Rice	nucleus	30.31	29.52
Os02t0661600-00	Rice	mitochondrion	16.29	25.82
Os03t0264600-00	Rice	endoplasmic reticulum, nucleus	22.68	23.61

Protein Annotations

MapMan:15.5.15	Gene3D:3.90.228.10	EntrezGene:4327046	EMBL:AK071014	EMBL:AK104311	ProteinID:BAB92595.1
ProteinID:BAF06385.1	ProteinID:BAS74692.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EnsemblPlantsGene:Os01g0785900	EnsemblPlants:Os01t0785900-01	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19
UniProt:Q8LQM0	SUPFAM:SSF56399	UniParc:UPI00000A5D9B	RefSeq:XP_015635096.1	InterPro:Znf_C2H2_type	SEG:seg

Description

Zinc finger, C2H2-type domain containing protein. (Os01t0785900-01);Zinc finger, C2H2-type domain containing protein. (Os01t0785900-02)

Coordinates

chr1:-:33329637..33331935

Molecular Weight (calculated)

50619.5 Da

IEP (calculated)

9.679

GRAVY (calculated)

-0.177

Length

485 amino acids

Sequence
(BLAST)

001: MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA AAAAGGGGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR
101: HPERPPSCSP RSIGSSEFLN PIAHEVVLST NSRCELKITG FGGCGGLAAA AAAGGGVLAS PHEADGDGAV VSSFVGTLRP GTPGPGWSHG LQYSGSCRGS
201: MRCTPPRSPN VLLDSRDAAA AGVTAHRASC EDAVKSFGKG GGLSCHRCGE QFSKWEALEA HHLSKHAVTE LVEGDSSRKI VEIICRTSLL KSESSCVRIE
301: RVFKVHNTQR TLARFEEYRE AVKLKASKLP KKHPRCLADG NELLRFHGAT LSCALGGAAG SSSLCASDKC AVCRIIRHGF SAKKEGKAGV GVFTTSTSGR
401: AYESIEASAG AVVGGDDPAA TRKALLVCRV IAGRVHKPLE NLKEFAGQTG FDSLAGKVGP YSNIEELYLL NPRALLPCFV VICKA

Best Arabidopsis Sequence Match ( AT5G54630.1 )
(BLAST)

001: MEDSSKKSQK KKKNKSKNNI PTVWFSLKKS LHCKSEPSDV HDPISTTKQQ QHLSTISTKK ISGISSGGAA VCGGGLSGCS RSIANLKDVI HGSKRHFEKP
101: PISSPRSIGS NEFLNPITHE VILSNSTCEL KITGVGDMAS PVGAADSGGG GGGGNGRSTT YVGMLRPGTP MHYLNHSASY RSQTRKGSFA LSERDRGGGG
201: GGEGLGFHTN RRVSLEMNRE STINGGNNSS VSCHKCGEQF NKLEAAEAHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS ENQCGRIDRV LKVHNMQKTL
301: ARFEEYRETV KIRASKLQKK HPRCLADGNE LLRFHGTTVA CGLGINGSTS VCTAEKCCVC RIIRNGFSSK REKNNGVGVF TASTSGRAFE SILVNGGDES
401: GDVDRTVRKV LIVCRVIAGR VHRPVENVEE MNGLMSGFDS LAGKVGLYTN VEELYLLNPK ALLPCFVVIC KP

Arabidopsis Description

AT5g54630/MRB17_13 [Source:UniProtKB/TrEMBL;Acc:Q9FIU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.