Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG27839 | Sorghum | nucleus, plastid | 65.65 | 62.0 |
| TraesCS4D01G108700.1 | Wheat | nucleus | 60.24 | 58.58 |
| Zm00001d053006_P001 | Maize | nucleus | 58.35 | 58.49 |
| TraesCS4B01G111000.1 | Wheat | nucleus | 59.76 | 58.12 |
| TraesCS4A01G207500.1 | Wheat | nucleus | 59.06 | 57.83 |
| HORVU4Hr1G019890.1 | Barley | nucleus | 57.88 | 57.21 |
| Zm00001d004822_P001 | Maize | nucleus, plastid | 46.35 | 56.45 |
| GSMUA_Achr9P00350_001 | Banana | nucleus | 36.0 | 53.68 |
| PGSC0003DMT400074652 | Potato | plastid | 37.65 | 49.69 |
| GSMUA_Achr5P01120_001 | Banana | nucleus, plastid | 42.12 | 46.49 |
| Solyc11g013220.1.1 | Tomato | nucleus | 41.18 | 43.42 |
| KRH64726 | Soybean | nucleus | 43.29 | 43.19 |
| VIT_18s0001g02000.t01 | Wine grape | nucleus, plastid | 34.12 | 43.03 |
| KRH53192 | Soybean | nucleus | 42.59 | 42.79 |
| VIT_18s0001g03670.t01 | Wine grape | nucleus | 44.47 | 38.65 |
| Os04t0690100-01 | Rice | nucleus | 43.53 | 37.15 |
| Os10t0554001-01 | Rice | cytosol | 15.76 | 36.81 |
| Os04t0115500-00 | Rice | nucleus | 33.65 | 29.79 |
| Os01t0785900-01 | Rice | mitochondrion, nucleus, peroxisome, plastid | 30.12 | 26.39 |
| Os06t0683000-01 | Rice | cytosol, nucleus, plastid | 27.53 | 25.16 |
| Os03t0264600-00 | Rice | endoplasmic reticulum, nucleus | 25.65 | 23.39 |
| Os02t0661600-00 | Rice | mitochondrion | 16.71 | 23.2 |
Protein Annotations
| EnsemblPlants:Os11t0169400-01 | EnsemblPlantsGene:Os11g0169400 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF21 | PFscan:PS50157 |
| ProteinID:BAT12852.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI000393BBF9 | UniProt:A0A0P0XZR9 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Similar to Zinc finger, C2H2 type family protein, expressed. (Os11t0169400-01)
Coordinates
chr11:+:3357459..3359728
Molecular Weight (calculated)
44787.6 Da
IEP (calculated)
9.083
GRAVY (calculated)
-0.376
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: KEKDKDGKKM SRVGSWGSMA FYSSSSSSRS QPVSAAEGKN GGKKEKRRSS ISRSITCAGS ICSTKESSVS SRGRGRRRRS GGGGGGDGGG GGSTSSRSLM
101: GPGYHGDSAA AVSASSSFNS VMTAATSATA TTTTTTTSSS ATSPPSALSS PLSSIGGSFR AMQIRKLSGC YLHCHSVLDP RTLAAVVFSC PDCDEVFVKP
201: DSLELHRSTR HAVSELGADD TSRNIVEIIF QSSWLKKNAP VCRIERILKV QSSDKTIKRF EQHKEAVKEK ARSAGDEAGR NPRCVADGNE LLRFHCTTFA
301: CSLGLAGGTA LCCASSSPPP LHCKLCSIIK DGFRVDGNGR ITTMATSGRA HDTAEVSPDG EKRAMLVCRV VAGRVKKLHS SNSSEDHDCD SVSPCSEGVY
401: SDLDELFVFS PRAILPCFVV IYSGY
101: GPGYHGDSAA AVSASSSFNS VMTAATSATA TTTTTTTSSS ATSPPSALSS PLSSIGGSFR AMQIRKLSGC YLHCHSVLDP RTLAAVVFSC PDCDEVFVKP
201: DSLELHRSTR HAVSELGADD TSRNIVEIIF QSSWLKKNAP VCRIERILKV QSSDKTIKRF EQHKEAVKEK ARSAGDEAGR NPRCVADGNE LLRFHCTTFA
301: CSLGLAGGTA LCCASSSPPP LHCKLCSIIK DGFRVDGNGR ITTMATSGRA HDTAEVSPDG EKRAMLVCRV VAGRVKKLHS SNSSEDHDCD SVSPCSEGVY
401: SDLDELFVFS PRAILPCFVV IYSGY
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.