CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053006_P001	Maize	nucleus	73.11	77.59
Zm00001d004822_P001	Maize	nucleus, plastid	57.33	73.93
Os11t0169400-01	Rice	nucleus	62.0	65.65
TraesCS4A01G207500.1	Wheat	nucleus	57.33	59.45
TraesCS4D01G108700.1	Wheat	nucleus	57.11	58.81
TraesCS4B01G111000.1	Wheat	nucleus	57.11	58.81
HORVU4Hr1G019890.1	Barley	nucleus	55.56	58.14
GSMUA_Achr9P00350_001	Banana	nucleus	35.56	56.14
PGSC0003DMT400074652	Potato	plastid	36.67	51.24
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	39.56	46.23
Solyc11g013220.1.1	Tomato	nucleus	40.0	44.66
KRH64726	Soybean	nucleus	41.33	43.66
KRH53192	Soybean	nucleus	40.67	43.26
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	31.56	42.14
VIT_18s0001g03670.t01	Wine grape	nucleus	42.67	39.26
EES11701	Sorghum	nucleus	40.89	37.17
EES10376	Sorghum	nucleus	34.89	28.97
EER92505	Sorghum	extracellular, plasma membrane	25.78	25.49
KXG31078	Sorghum	plastid	17.78	25.32
EER88828	Sorghum	cytosol	24.0	25.0
KXG38947	Sorghum	mitochondrion	17.56	24.69
EES03733	Sorghum	nucleus	28.44	24.47

Protein Annotations

EnsemblPlants:KXG27839	EnsemblPlantsGene:SORBI_3005G052700	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21	PFscan:PS50157	ProteinID:KXG27839
ProteinID:KXG27839.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI00081AC600	UniProt:A0A1B6PQ86
MapMan:15.5.15	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:5314737..5316759

Molecular Weight (calculated)

48357.5 Da

IEP (calculated)

9.154

GRAVY (calculated)

-0.439

Length

450 amino acids

Sequence
(BLAST)

001: MPCPPMAASA KKMSRVPDRK KPSRSSSSSS SSSSWVARSM GFYYHSSTTS SSKSRAQATD GKDSNVDKQS NGSSTSKKNK KRSISIGRSL TCAGRSSICS
101: TKESSVMSRD HGDRDRGAAR SASSRSLRAP DVDAVYAAAV SATSSFNSET TAATTAVTTS SSSPLSSALS SPLSSIGGSS FRGVQQIRKL SRCYECHSVF
201: DPRSFAAAAT AAFPCADCDE VFNKAESLEL HRATRHAVSE LGSEDTSRNI VEIIFQSSWL RKQAPVCKIE RILKVQSSER TVKRFEQYKE SIRERASSDQ
301: GPGKKNPRCV ADGNELLRFH CTTFTCSLGL AGTTALCCRS PASAPCNLCS IIRDGFRVDG DGKIATMATS GRAHDMAQVL SDSDKRAMLV CRVVAGRVKK
401: ATSDEKSSED YCDFDSVSSS TEGVYSDLDE LFVFNPRAIL PCFVVIYSGY

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.